Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 2.0e-147 525.8 278 100.0
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 1.8e-23 114.0 210 35.2
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 1.9e-20 104.0 213 31.5
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 4.0e-18 96.3 225 28.0
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 5.2e-18 95.9 201 27.4
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 8.9e-18 95.1 201 27.4
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 1.5e-17 94.4 225 27.6
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 3.4e-17 93.2 202 28.2
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 4.4e-17 92.8 202 28.2
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 4.4e-17 92.8 202 28.7
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 5.8e-17 92.4 211 28.4
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 7.5e-17 92.0 197 27.4
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 9.8e-17 91.7 190 31.1
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 1.3e-16 91.3 199 30.2
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 1.3e-16 91.3 210 25.7
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 1.3e-16 91.3 202 28.7
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 2.2e-16 90.5 202 27.7
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 2.9e-16 90.1 220 26.4
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 3.7e-16 89.7 220 26.8
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 6.4e-16 89.0 220 26.4
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 6.4e-16 89.0 199 27.1
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 8.3e-16 88.6 162 30.2
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 8.3e-16 88.6 221 27.6
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 8.3e-16 88.6 197 26.9
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 1.1e-15 88.2 195 27.7
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 1.1e-15 88.2 199 28.1
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 1.1e-15 88.2 202 26.7
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 1.1e-15 88.2 199 26.1
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 1.4e-15 87.8 195 27.2
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 1.4e-15 87.8 220 25.5
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 1.4e-15 87.8 211 27.5
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 1.4e-15 87.8 202 27.7
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 1.4e-15 87.8 210 27.1
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 1.9e-15 87.4 200 26.5
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 2.4e-15 87.0 220 25.9
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 2.4e-15 87.0 222 27.9
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 2.4e-15 87.0 197 26.4
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 3.2e-15 86.7 203 26.1
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 4.1e-15 86.3 199 27.6
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 5.4e-15 85.9 202 28.2
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 5.4e-15 85.9 199 25.6
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 5.4e-15 85.9 199 25.6
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 7.0e-15 85.5 195 26.7
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 7.0e-15 85.5 199 28.1
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 9.2e-15 85.1 199 27.1
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 9.2e-15 85.1 197 25.9
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 9.2e-15 85.1 199 26.6
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 9.2e-15 85.1 181 26.0
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 1.2e-14 84.7 199 27.1
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 1.2e-14 84.7 218 27.1
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 1.2e-14 84.7 195 25.6
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 1.2e-14 84.7 199 25.1
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 1.6e-14 84.3 202 26.2
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 1.6e-14 84.3 197 26.4
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 1.6e-14 84.3 199 26.1
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 1.6e-14 84.3 221 26.7
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 1.6e-14 84.3 197 26.4
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 2.0e-14 84.0 199 24.6
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 2.0e-14 84.0 200 26.5
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 2.0e-14 84.0 199 26.1
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 2.0e-14 84.0 199 25.1
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 2.7e-14 83.6 199 27.6
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 3.5e-14 83.2 202 24.8
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 4.6e-14 82.8 199 26.1
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 6.0e-14 82.4 200 27.0
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 6.0e-14 82.4 195 26.2
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 7.8e-14 82.0 204 27.0
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 7.8e-14 82.0 201 26.4
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 7.8e-14 82.0 199 23.1
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 1.0e-13 81.6 190 26.3
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.0e-13 81.6 201 27.9
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.0e-13 81.6 201 27.9
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 1.0e-13 81.6 235 25.5
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 1.3e-13 81.3 199 26.6
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 1.3e-13 81.3 199 26.6
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 1.3e-13 81.3 224 24.1
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 1.7e-13 80.9 190 26.3
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 1.7e-13 80.9 190 26.3
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 1.7e-13 80.9 147 29.9
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 3.0e-13 80.1 152 28.3
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 3.0e-13 80.1 232 23.3
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 3.0e-13 80.1 197 25.4
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 3.0e-13 80.1 197 25.4
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 3.9e-13 79.7 152 28.3
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 5.0e-13 79.3 210 28.6
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 5.0e-13 79.3 210 28.6
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 6.6e-13 79.0 212 27.8
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 8.6e-13 78.6 210 28.1
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 1.1e-12 78.2 202 26.2
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 1.5e-12 77.8 221 26.7
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 1.9e-12 77.4 167 26.9
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.9e-12 77.4 161 28.6
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 2.5e-12 77.0 211 23.7
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 5.6e-12 75.9 131 35.9
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 7.3e-12 75.5 142 29.6
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 9.5e-12 75.1 147 27.9
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 9.5e-12 75.1 199 24.1
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 2.1e-11 73.9 167 29.9
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 2.1e-11 73.9 168 28.0
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 3.6e-11 73.2 123 34.1
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 3.6e-11 73.2 107 34.6
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 6.2e-11 72.4 195 25.6
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 1.4e-10 71.2 105 38.1
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 3.1e-10 70.1 133 27.8
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 5.2e-10 69.3 105 32.4
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 5.2e-10 69.3 240 24.2
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 8.9e-10 68.6 119 34.5
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 2.6e-09 67.0 192 29.7
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 9.8e-09 65.1 197 30.5
AL7G35440 Arabidopsis lyrata HOM05D005310 ORTHO05D006920 2.9e-08 63.5 182 31.3
AT4G18810 Arabidopsis thaliana HOM05D005310 ORTHO05D006920 2.9e-08 63.5 182 31.3
Carub.0007s2242 Capsella rubella HOM05D005310 ORTHO05D006920 3.7e-08 63.2 182 30.8
Cre06.g274650 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D006920 3.7e-08 63.2 198 29.8
MELO3C002677.2 Cucumis melo HOM05D005310 ORTHO05D006920 3.7e-08 63.2 178 30.9
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 4.9e-08 62.8 114 32.5
Aa31LG6G1520 Aethionema arabicum HOM05D005310 ORTHO05D006920 6.4e-08 62.4 182 30.8
Cre05.g244800 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D006920 8.3e-08 62.0 185 29.7
Potri.004G061200 Populus trichocarpa HOM05D005310 ORTHO05D006920 1.1e-07 61.6 176 28.4
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 2.4e-07 60.5 204 27.9
Sp7g17520 Schrenkiella parvula HOM05D005310 ORTHO05D006920 2.4e-07 60.5 182 30.8
CARHR225670 Cardamine hirsuta HOM05D005310 ORTHO05D006920 3.2e-07 60.1 180 30.0
Thhalv10024714m.g Eutrema salsugineum HOM05D005310 ORTHO05D006920 3.2e-07 60.1 182 30.8
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 5.4e-07 59.3 190 28.9
Eucgr.E02785 Eucalyptus grandis HOM05D005310 ORTHO05D006920 5.4e-07 59.3 182 29.1
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 5.4e-07 59.3 210 29.5
Glyma.05G161000 Glycine max HOM05D005310 ORTHO05D006920 7.1e-07 58.9 182 26.9
Glyma.08G118400 Glycine max HOM05D005310 ORTHO05D006920 7.1e-07 58.9 182 26.9
TPR.G6733 Trifolium pratense HOM05D005310 ORTHO05D006920 7.1e-07 58.9 183 27.9
VMungo0251G0247 Vigna mungo HOM05D005310 ORTHO05D006920 7.1e-07 58.9 182 26.9
Atru.chr10.1571 Acer truncatum HOM05D005310 ORTHO05D006920 9.2e-07 58.5 202 27.7
Ca_17897_v3 Cicer arietinum L. HOM05D005310 ORTHO05D006920 9.2e-07 58.5 178 27.0
Medtr8g087310 Medicago truncatula HOM05D005310 ORTHO05D006920 9.2e-07 58.5 185 27.6
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 1.6e-06 57.8 182 26.9
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 1.6e-06 57.8 204 27.0
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 1.6e-06 57.8 204 27.0
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 1.6e-06 57.8 182 25.8
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 2.1e-06 57.4 182 29.7
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 2.1e-06 57.4 182 29.7
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 2.1e-06 57.4 182 29.7
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 2.1e-06 57.4 182 29.7
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 2.1e-06 57.4 107 33.6
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 2.7e-06 57.0 197 28.9
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 2.7e-06 57.0 84 38.1
FAN11G0629 Fragaria x ananassa HOM05D005310 ORTHO05D006920 3.5e-06 56.6 210 29.0
Lalb_Chr12g0204951 Lupinus albus HOM05D005310 ORTHO05D006920 3.5e-06 56.6 139 30.2
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 4.6e-06 56.2 182 26.4
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 4.6e-06 56.2 84 39.3
Phvul.002G241100 Phaseolus vulgaris HOM05D005310 ORTHO05D006920 4.6e-06 56.2 138 28.3
Psat7g068720 Pisum sativum HOM05D005310 ORTHO05D006920 4.6e-06 56.2 183 27.3
Sed0028201 Sechium edule HOM05D005310 ORTHO05D006920 4.6e-06 56.2 182 28.0
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 7.8e-06 55.5 182 26.9


User provided reference genes

Program Settings