Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.2e-92 343.2 176 100.0
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 9.3e-21 104.4 126 43.7
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 3.0e-19 99.4 145 42.1
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 3.0e-19 99.4 161 38.5
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 3.9e-19 99.0 147 39.5
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 6.6e-19 98.2 125 44.8
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 6.6e-19 98.2 143 38.5
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 1.1e-18 97.4 185 36.8
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.1e-18 97.4 143 39.2
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 1.5e-18 97.1 169 36.1
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.9e-18 96.7 142 37.3
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 1.9e-18 96.7 168 35.1
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 2.5e-18 96.3 169 36.1
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 2.5e-18 96.3 168 35.1
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 2.5e-18 96.3 142 41.5
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 3.3e-18 95.9 142 37.3
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 3.3e-18 95.9 168 35.7
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 4.3e-18 95.5 142 38.0
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 4.3e-18 95.5 168 35.1
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 4.3e-18 95.5 144 38.9
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 4.3e-18 95.5 146 38.4
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 5.6e-18 95.1 168 35.1
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 5.6e-18 95.1 168 35.1
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 5.6e-18 95.1 168 35.1
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 5.6e-18 95.1 144 40.3
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 7.3e-18 94.7 167 34.7
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 7.3e-18 94.7 139 37.4
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 9.6e-18 94.4 167 35.3
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 9.6e-18 94.4 149 39.6
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 9.6e-18 94.4 144 38.9
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 9.6e-18 94.4 130 40.0
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 9.6e-18 94.4 145 40.7
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 9.6e-18 94.4 161 37.9
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 1.3e-17 94.0 165 33.9
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.6e-17 93.6 130 40.0
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 1.6e-17 93.6 142 39.4
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.6e-17 93.6 126 41.3
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 1.6e-17 93.6 130 40.0
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 2.1e-17 93.2 160 38.1
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 2.1e-17 93.2 144 40.3
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.1e-17 93.2 168 38.1
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 2.1e-17 93.2 160 35.0
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 2.8e-17 92.8 146 39.0
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 2.8e-17 92.8 174 33.9
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 2.8e-17 92.8 129 41.1
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.8e-17 92.8 168 37.5
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 3.6e-17 92.4 130 41.5
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 3.6e-17 92.4 157 35.7
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 3.6e-17 92.4 130 41.5
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 3.6e-17 92.4 158 36.7
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 4.8e-17 92.0 145 37.2
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.8e-17 92.0 166 36.1
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 6.2e-17 91.7 130 40.8
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 6.2e-17 91.7 146 38.4
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 6.2e-17 91.7 144 37.5
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 6.2e-17 91.7 154 37.0
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 6.2e-17 91.7 160 39.4
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 6.2e-17 91.7 142 39.4
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 6.2e-17 91.7 174 35.1
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 6.2e-17 91.7 177 35.0
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 8.1e-17 91.3 130 40.0
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 8.1e-17 91.3 144 38.9
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 8.1e-17 91.3 144 38.9
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 8.1e-17 91.3 129 41.1
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 8.1e-17 91.3 168 39.9
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 8.1e-17 91.3 139 38.8
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 8.1e-17 91.3 146 39.7
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 8.1e-17 91.3 130 40.0
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 1.1e-16 90.9 130 39.2
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 1.1e-16 90.9 130 39.2
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 1.1e-16 90.9 141 39.7
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.1e-16 90.9 158 36.1
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.1e-16 90.9 168 39.3
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 1.4e-16 90.5 165 37.6
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 1.4e-16 90.5 174 35.6
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 1.4e-16 90.5 140 39.3
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.4e-16 90.5 141 39.7
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 1.4e-16 90.5 144 38.9
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 1.4e-16 90.5 130 40.0
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 2.4e-16 89.7 175 34.9
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.4e-16 89.7 178 35.4
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 2.4e-16 89.7 145 40.0
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 2.4e-16 89.7 160 36.9
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 3.1e-16 89.4 170 35.3
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 3.1e-16 89.4 182 36.8
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 4.0e-16 89.0 154 37.0
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 4.0e-16 89.0 174 35.6
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 4.0e-16 89.0 167 34.7
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 5.3e-16 88.6 140 37.9
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 5.3e-16 88.6 150 38.0
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 5.3e-16 88.6 120 43.3
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 5.3e-16 88.6 181 35.9
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 5.3e-16 88.6 124 41.1
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 5.3e-16 88.6 159 33.3
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 9.0e-16 87.8 168 35.7
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 1.5e-15 87.0 98 45.9
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 1.5e-15 87.0 129 40.3
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.0e-15 86.7 128 39.8
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.0e-15 86.7 148 38.5
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 2.6e-15 86.3 96 45.8
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 2.6e-15 86.3 141 39.7
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 3.4e-15 85.9 183 34.4
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 5.8e-15 85.1 148 37.2
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 5.8e-15 85.1 148 37.2
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 9.9e-15 84.3 144 38.9
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 1.7e-14 83.6 122 39.3
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.7e-14 83.6 132 37.9
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 1.7e-14 83.6 139 38.1
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 8.4e-14 81.3 129 36.4
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 1.1e-13 80.9 133 37.6
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 1.4e-13 80.5 149 35.6
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.4e-13 80.5 141 36.2
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.4e-13 80.5 134 39.6
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 1.9e-13 80.1 141 37.6
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.9e-13 80.1 115 38.3
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.9e-13 80.1 118 42.4
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.2e-13 79.3 163 34.4
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 3.2e-13 79.3 138 36.2
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 3.2e-13 79.3 118 41.5
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.2e-13 79.3 116 42.2
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 4.2e-13 79.0 149 34.9
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 5.4e-13 78.6 181 32.6
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 9.3e-13 77.8 136 36.0
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 1.2e-12 77.4 155 36.8
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 2.7e-12 76.3 123 39.8
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 2.7e-12 76.3 208 29.3
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 3.5e-12 75.9 158 34.2
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 6.0e-12 75.1 111 39.6
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 7.9e-12 74.7 136 37.5
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.0e-11 74.3 89 47.2
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 3.0e-11 72.8 131 35.9
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 5.1e-11 72.0 124 38.7
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 1.1e-10 70.9 156 35.9
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.8e-09 65.5 220 25.9
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 4.0e-08 62.4 126 33.3
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 5.3e-08 62.0 110 37.3
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 5.3e-08 62.0 107 36.4
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 6.9e-08 61.6 93 40.9
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 2.6e-07 59.7 91 39.6
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 3.4e-07 59.3 104 38.5
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 4.5e-07 58.9 112 36.6
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 4.5e-07 58.9 107 36.4
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 5.8e-07 58.5 131 29.8
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 4.9e-06 55.5 77 39.0
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 4.9e-06 55.5 93 37.6
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.9e-06 55.5 114 35.1


User provided reference genes

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