Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 0.0e+00 1211.8 681 100.0
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 6.2e-65 253.1 518 33.8
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.0e-63 248.1 533 33.6
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 7.6e-63 246.1 315 42.9
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.7e-62 245.0 313 43.8
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 7.1e-61 239.6 312 43.3
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.2e-60 238.8 320 42.5
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.6e-60 238.4 315 42.2
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.6e-60 238.4 303 43.9
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 4.6e-60 236.9 313 42.2
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 6.0e-60 236.5 308 42.9
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 6.0e-60 236.5 315 41.6
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 6.0e-60 236.5 522 33.3
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 7.9e-60 236.1 321 41.4
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.0e-59 235.7 313 41.5
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.0e-59 235.7 309 41.4
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.0e-59 235.7 312 41.3
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.0e-59 235.7 309 41.1
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.3e-59 235.3 311 42.1
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.8e-59 235.0 309 42.1
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.8e-59 235.0 313 42.2
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.0e-59 234.2 309 41.7
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 3.0e-59 234.2 314 42.4
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 3.0e-59 234.2 312 41.7
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 5.1e-59 233.4 301 44.2
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 5.1e-59 233.4 308 42.2
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.7e-59 233.0 318 40.9
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 6.7e-59 233.0 399 36.8
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 6.7e-59 233.0 306 42.8
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 6.7e-59 233.0 312 41.0
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 6.7e-59 233.0 314 41.4
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 8.7e-59 232.6 307 41.0
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.1e-58 232.3 296 40.5
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.1e-58 232.3 306 40.5
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.1e-58 232.3 306 40.5
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.1e-58 232.3 316 40.5
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.5e-58 231.9 313 42.2
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.5e-58 231.9 297 41.1
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 1.5e-58 231.9 317 40.4
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 1.5e-58 231.9 315 41.9
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.9e-58 231.5 318 40.9
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.9e-58 231.5 310 41.6
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.9e-58 231.5 306 41.5
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.9e-58 231.5 530 32.1
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 3.3e-58 230.7 297 41.4
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 3.3e-58 230.7 297 41.4
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 3.3e-58 230.7 315 41.9
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 4.3e-58 230.3 316 41.1
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 4.3e-58 230.3 314 41.1
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 4.3e-58 230.3 307 41.4
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.7e-58 229.9 518 32.0
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 7.4e-58 229.6 312 40.4
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 7.4e-58 229.6 312 40.4
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 7.4e-58 229.6 312 40.4
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 9.7e-58 229.2 306 41.5
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 9.7e-58 229.2 298 40.9
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.3e-57 228.8 307 41.7
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.3e-57 228.8 312 40.7
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.3e-57 228.8 306 41.5
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.6e-57 228.4 312 40.4
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.6e-57 228.4 299 41.5
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 2.1e-57 228.0 524 31.5
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 2.1e-57 228.0 315 41.0
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-57 227.6 298 40.9
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 2.8e-57 227.6 306 40.5
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 2.8e-57 227.6 305 41.6
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 3.7e-57 227.3 306 41.5
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 3.7e-57 227.3 312 40.1
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 6.3e-57 226.5 324 39.8
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 8.2e-57 226.1 313 39.9
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.4e-56 225.3 518 29.9
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.4e-56 224.6 307 39.1
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 2.4e-56 224.6 307 41.0
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.4e-56 224.6 315 41.0
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 2.4e-56 224.6 325 43.4
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 3.1e-56 224.2 315 40.6
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.1e-56 224.2 311 41.2
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 4.1e-56 223.8 311 40.2
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 4.1e-56 223.8 314 41.4
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 6.9e-56 223.0 312 39.7
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 9.0e-56 222.6 313 39.6
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 9.0e-56 222.6 314 40.1
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.2e-55 222.2 293 40.6
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.2e-55 222.2 299 40.8
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.2e-55 222.2 299 40.8
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.6e-55 221.1 314 40.1
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 5.9e-55 219.9 521 31.5
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.2e-54 218.0 309 40.1
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 2.9e-54 217.6 378 36.8
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 5.0e-54 216.9 329 40.4
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 5.0e-54 216.9 305 38.4
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.5e-54 216.5 318 39.9
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.1e-53 215.7 353 38.0
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.9e-53 214.9 306 39.5
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 4.2e-53 213.8 291 40.2
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.1e-52 211.5 332 39.2
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 2.7e-52 211.1 529 29.7
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.7e-52 211.1 306 39.5
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.6e-52 210.7 284 41.9
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 3.9e-51 207.2 311 38.9
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 3.9e-51 207.2 311 38.9
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.5e-50 205.3 322 37.0
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.9e-50 204.9 318 38.1
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.8e-49 201.1 563 28.8
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 3.7e-49 200.7 518 30.9
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.1e-48 199.1 326 38.7
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.4e-48 198.7 221 49.8
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 2.4e-48 198.0 326 38.3
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.2e-47 195.7 542 30.4
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.0e-47 194.9 311 38.3
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.7e-46 191.8 309 37.9
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 8.5e-46 189.5 316 38.3
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 1.1e-45 189.1 300 38.7
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 3.6e-44 184.1 260 41.5
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 6.3e-41 173.3 259 40.2
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.8e-40 171.8 302 35.1
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.5e-39 168.7 315 34.6
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.7e-38 165.2 297 37.0
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 3.0e-35 154.5 429 27.7
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.0e-35 154.5 248 36.3
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 8.8e-35 152.9 216 39.8
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.5e-29 135.6 128 49.2
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 7.2e-29 133.3 203 38.9
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.6e-28 132.1 275 31.6
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 4.0e-27 127.5 118 50.0
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-25 121.3 182 39.0
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.7e-20 104.8 105 46.7
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 8.3e-17 93.2 165 38.2
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 1.8e-16 92.0 92 45.7
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 9.1e-16 89.7 126 38.1
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.6e-15 89.0 89 46.1
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.3e-14 85.1 117 37.6
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.3e-14 85.1 131 39.7
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.3e-14 85.1 128 39.1
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 3.8e-14 84.3 81 48.1
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.0e-11 76.3 79 44.3
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 1.4e-11 75.9 79 44.3
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 4.4e-10 70.9 64 51.6
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 3.1e-08 64.7 115 38.3
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 4.1e-08 64.3 66 43.9
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.7e-07 61.6 123 33.3
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 8.6e-06 56.6 55 47.3


User provided reference genes

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