Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g054650 Chlamydomonas reinhardtii HOM05D006843 ORTHO05D008517 3.6e-230 802.0 672 100.0
MBI18_g14135_MAGBIO Magnolia biondii HOM05D006843 ORTHO05D008517 4.8e-09 67.4 98 39.8
RcHm_v2.0_Chr5g0040061 Rosa chinensis HOM05D006843 ORTHO05D008517 4.8e-09 67.4 100 40.0
PGR083G2310 Punica granatum HOM05D006843 ORTHO05D008517 1.4e-08 65.9 127 33.9
GSVIVG01037656001 Vitis vinifera HOM05D006843 ORTHO05D008517 1.8e-08 65.5 96 35.4
Haze_09681 Corylus avellana HOM05D006843 ORTHO05D008517 3.1e-08 64.7 96 36.5
Dinv22258 Davidia involucrata HOM05D006843 ORTHO05D008517 3.1e-08 64.7 96 36.5
FAN16G2069 Fragaria x ananassa HOM05D006843 ORTHO05D008517 3.1e-08 64.7 102 38.2
PSO170G2271 Papaver somniferum HOM05D006843 ORTHO05D008517 3.1e-08 64.7 70 42.9
Aqoxy4G01855 Aquilegia oxysepala HOM05D006843 ORTHO05D008517 5.3e-08 63.9 96 37.5
CSS0043197 Camellia sinensis var. sinensis HOM05D006843 ORTHO05D008517 5.3e-08 63.9 96 35.4
FvH4_3g22820 Fragaria vesca HOM05D006843 ORTHO05D008517 5.3e-08 63.9 102 38.2
FAN25G2076 Fragaria x ananassa HOM05D006843 ORTHO05D008517 5.3e-08 63.9 102 38.2
PSO063G3629 Papaver somniferum HOM05D006843 ORTHO05D008517 5.3e-08 63.9 70 42.9
TAR624G1415 Trochodendron aralioides HOM05D006843 ORTHO05D008517 5.3e-08 63.9 95 36.8
Cfa020337 Carpinus fangiana HOM05D006843 ORTHO05D008517 6.9e-08 63.5 96 36.5
CiPaw.11G190100 Carya illinoinensis HOM05D006843 ORTHO05D008517 6.9e-08 63.5 96 35.4
Migut.M01756 Erythranthe guttata HOM05D006843 ORTHO05D008517 6.9e-08 63.5 101 39.6
QL08p010009 Quercus lobata HOM05D006843 ORTHO05D008517 6.9e-08 63.5 96 35.4
CiPaw.12G130200 Carya illinoinensis HOM05D006843 ORTHO05D008517 1.2e-07 62.8 96 34.4
CBR_g34195 Chara braunii HOM05D006843 ORTHO05D008517 1.5e-07 62.4 94 37.2
Duzib268G1400 Durio zibethinus HOM05D006843 ORTHO05D008517 1.5e-07 62.4 96 34.4
Gohir.A01G079900 Gossypium hirsutum HOM05D006843 ORTHO05D008517 1.5e-07 62.4 96 34.4
Gohir.D01G067100 Gossypium hirsutum HOM05D006843 ORTHO05D008517 3.4e-07 61.2 96 34.4
Gorai.002G089000 Gossypium raimondii HOM05D006843 ORTHO05D008517 3.4e-07 61.2 96 34.4
Nn1g03519 Nelumbo nucifera HOM05D006843 ORTHO05D008517 3.4e-07 61.2 95 34.7
Rhsim06G0217400 Rhododendron simsii HOM05D006843 ORTHO05D008517 3.4e-07 61.2 96 35.4
Cc05_g13830 Coffea canephora HOM05D006843 ORTHO05D008517 5.9e-07 60.5 96 33.3
LjContig00272g0007634 Lotus japonicus HOM05D006843 ORTHO05D008517 5.9e-07 60.5 96 33.3
Sed0013659 Sechium edule HOM05D006843 ORTHO05D008517 5.9e-07 60.5 96 35.4
Sc03g0008560 Simmondsia chinensis HOM05D006843 ORTHO05D008517 5.9e-07 60.5 96 33.3
TWI39G1240 Tripterygium wilfordii HOM05D006843 ORTHO05D008517 5.9e-07 60.5 96 34.4
Os06g0679700 Oryza sativa ssp. japonica HOM05D006843 ORTHO05D008517 7.7e-07 60.1 88 35.2
VMungo0647G1675 Vigna mungo HOM05D006843 ORTHO05D008517 7.7e-07 60.1 96 34.4
Glyma.14G022900 Glycine max HOM05D006843 ORTHO05D008517 1.0e-06 59.7 96 35.4
Thecc.07G035800 Theobroma cacao HOM05D006843 ORTHO05D008517 1.0e-06 59.7 96 33.3
Ciclev10008752m.g Citrus clementina HOM05D006843 ORTHO05D008517 1.3e-06 59.3 96 32.3
MD11G1217200 Malus domestica HOM05D006843 ORTHO05D008517 1.3e-06 59.3 96 33.3
Lsat_1_v5_gn_7_109981 Lactuca sativa HOM05D006843 ORTHO05D008517 1.7e-06 58.9 96 32.3
Medtr5g092970 Medicago truncatula HOM05D006843 ORTHO05D008517 1.7e-06 58.9 96 34.4
Phvul.008G268300 Phaseolus vulgaris HOM05D006843 ORTHO05D008517 1.7e-06 58.9 96 33.3
Prupe.4G214500 Prunus persica HOM05D006843 ORTHO05D008517 1.7e-06 58.9 96 34.4
Actinidia05093 Actinidia chinensis HOM05D006843 ORTHO05D008517 2.2e-06 58.5 135 29.6
CARHR234590 Cardamine hirsuta HOM05D006843 ORTHO05D008517 2.2e-06 58.5 100 35.0
PGSC0003DMG402022316 Solanum tuberosum HOM05D006843 ORTHO05D008517 2.2e-06 58.5 96 33.3
MELO3C013160.2 Cucumis melo HOM05D006843 ORTHO05D008517 2.9e-06 58.2 96 35.4
Lalb_Chr04g0248381 Lupinus albus HOM05D006843 ORTHO05D008517 2.9e-06 58.2 96 32.3
CANSAT11G0475 Cannabis sativa HOM05D006843 ORTHO05D008517 3.8e-06 57.8 96 35.4
Cpa.g.sc12.302 Carica papaya HOM05D006843 ORTHO05D008517 3.8e-06 57.8 100 35.0
HanXRQChr11g0337271 Helianthus annuus HOM05D006843 ORTHO05D008517 3.8e-06 57.8 99 32.3
CsaV3_7G021850 Cucumis sativus L. HOM05D006843 ORTHO05D008517 5.0e-06 57.4 96 34.4
TPR.G1211 Trifolium pratense HOM05D006843 ORTHO05D008517 5.0e-06 57.4 91 34.1
arahy.Tifrunner.gnm1.ann1.0IA02T Arachis hypogaea HOM05D006843 ORTHO05D008517 6.5e-06 57.0 97 34.0
arahy.Tifrunner.gnm1.ann1.57CCTN Arachis hypogaea HOM05D006843 ORTHO05D008517 6.5e-06 57.0 97 34.0
arahy.Tifrunner.gnm1.ann1.BV1YAY Arachis hypogaea HOM05D006843 ORTHO05D008517 6.5e-06 57.0 97 34.0
arahy.Tifrunner.gnm1.ann1.H57FKH Arachis hypogaea HOM05D006843 ORTHO05D008517 6.5e-06 57.0 97 34.0
arahy.Tifrunner.gnm1.ann1.Q92UKX Arachis hypogaea HOM05D006843 ORTHO05D008517 6.5e-06 57.0 96 32.3
Ca_06326_v3 Cicer arietinum L. HOM05D006843 ORTHO05D008517 6.5e-06 57.0 91 34.1
ClCG09G010830 Citrullus lanatus HOM05D006843 ORTHO05D008517 6.5e-06 57.0 96 34.4
Psat5g064560 Pisum sativum HOM05D006843 ORTHO05D008517 6.5e-06 57.0 91 36.3


User provided reference genes

Program Settings