Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 7.0e-226 787.7 682 100.0
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 6.8e-19 100.1 442 45.2
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.3e-17 95.9 226 46.5
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.2e-17 95.1 236 46.2
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 4.9e-17 94.0 240 33.3
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 6.3e-17 93.6 671 39.2
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 1.1e-16 92.8 683 43.2
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.1e-16 92.8 226 45.6
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.8e-16 92.0 238 47.1
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 3.1e-16 91.3 237 46.0
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.1e-16 90.9 226 45.1
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 9.2e-16 89.7 226 46.5
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 1.2e-15 89.4 236 33.1
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 1.2e-15 89.4 226 47.8
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.7e-14 85.5 225 46.2
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 1.7e-14 85.5 235 33.2
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 2.9e-14 84.7 236 44.9
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 3.8e-14 84.3 226 47.3
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.8e-14 84.3 514 35.8
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.5e-13 82.4 226 45.6
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.9e-13 82.0 226 53.1
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 2.5e-13 81.6 226 44.7
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 4.3e-13 80.9 225 43.6
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 5.6e-13 80.5 228 53.1
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 7.3e-13 80.1 225 43.6
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 7.3e-13 80.1 226 42.5
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 1.2e-12 79.3 451 34.4
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.6e-12 79.0 450 36.7
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 2.1e-12 78.6 225 47.1
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 3.6e-12 77.8 227 44.1
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 4.7e-12 77.4 257 38.1
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 4.7e-12 77.4 238 43.7
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 6.1e-12 77.0 225 44.0
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 8.0e-12 76.6 237 42.2
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.0e-11 76.3 237 43.0
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.0e-11 76.3 237 42.6
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.4e-11 75.9 227 49.8
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.4e-11 75.9 239 29.3
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.4e-11 75.9 237 40.5
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 1.8e-11 75.5 237 46.8
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 2.3e-11 75.1 238 43.7
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 2.3e-11 75.1 234 45.7
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 3.0e-11 74.7 257 38.1
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 4.0e-11 74.3 225 45.8
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 6.8e-11 73.6 238 43.7
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 8.9e-11 73.2 226 47.3
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.2e-10 72.8 243 42.8
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.5e-10 72.4 236 50.0
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 3.4e-10 71.2 243 43.2
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 5.7e-10 70.5 227 45.4
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 5.7e-10 70.5 231 55.4
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 9.8e-10 69.7 240 43.8
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 9.8e-10 69.7 226 54.4
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 9.8e-10 69.7 227 50.7
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.3e-09 69.3 225 55.6
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 1.7e-09 68.9 220 52.7
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 2.2e-09 68.6 227 50.2
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 2.2e-09 68.6 225 40.4
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 2.2e-09 68.6 225 43.6
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 8.3e-09 66.6 271 45.4
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.1e-08 66.2 42 76.2
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.1e-08 66.2 177 51.4
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.8e-08 65.5 217 30.0
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 3.2e-08 64.7 226 46.5
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 4.1e-08 64.3 227 45.8
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 5.4e-08 63.9 44 72.7
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 5.4e-08 63.9 42 73.8
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 5.4e-08 63.9 42 73.8
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 7.0e-08 63.5 227 47.6
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 9.2e-08 63.2 68 50.0
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.2e-07 62.8 236 50.4
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 1.6e-07 62.4 226 49.6
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 2.7e-07 61.6 42 66.7
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 3.5e-07 61.2 244 32.8
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 4.6e-07 60.8 42 69.0
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 7.8e-07 60.1 41 68.3
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 7.8e-07 60.1 41 68.3
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 7.8e-07 60.1 41 68.3
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 1.0e-06 59.7 236 51.7
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 1.0e-06 59.7 41 73.2
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.0e-06 59.7 107 60.7
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 1.3e-06 59.3 42 69.0
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.3e-06 59.3 42 69.0
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.7e-06 58.9 41 68.3
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.7e-06 58.9 41 70.7
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 3.0e-06 58.2 41 65.9
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 3.0e-06 58.2 41 65.9
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 3.0e-06 58.2 41 65.9
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 5.0e-06 57.4 80 35.0
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 5.0e-06 57.4 225 44.0


User provided reference genes

Program Settings