Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 2.6e-149 531.9 259 100.0
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 3.0e-60 236.1 196 56.1
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 2.5e-59 233.0 197 54.8
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 3.7e-58 229.2 210 49.0
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 4.8e-58 228.8 196 52.6
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 4.8e-58 228.8 221 50.7
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.4e-57 227.3 230 49.1
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 4.1e-57 225.7 213 53.1
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 4.1e-57 225.7 210 51.4
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 4.1e-57 225.7 210 51.4
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 5.3e-57 225.3 207 53.1
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 5.3e-57 225.3 244 48.8
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 5.3e-57 225.3 234 48.7
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 6.9e-57 224.9 192 54.2
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 1.2e-56 224.2 221 48.4
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 1.5e-56 223.8 196 55.1
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 1.5e-56 223.8 233 49.4
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 1.5e-56 223.8 189 55.0
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 2.6e-56 223.0 196 54.6
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 2.6e-56 223.0 214 51.4
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 2.6e-56 223.0 194 55.2
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 3.4e-56 222.6 203 51.2
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 3.4e-56 222.6 196 55.1
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 4.5e-56 222.2 251 47.8
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 4.5e-56 222.2 196 55.1
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 5.9e-56 221.9 259 46.7
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.0e-55 221.1 192 54.7
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 1.0e-55 221.1 198 54.5
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 1.0e-55 221.1 208 51.0
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.3e-55 220.7 208 51.4
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.3e-55 220.7 250 46.0
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 1.3e-55 220.7 224 52.7
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 1.3e-55 220.7 211 51.7
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.3e-55 220.7 194 54.6
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 1.7e-55 220.3 203 52.7
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 2.2e-55 219.9 192 54.2
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 2.9e-55 219.5 192 52.1
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 3.8e-55 219.2 233 48.1
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 3.8e-55 219.2 246 46.3
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 6.5e-55 218.4 193 51.8
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 6.5e-55 218.4 213 50.7
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 6.5e-55 218.4 207 51.2
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 8.5e-55 218.0 221 50.2
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 8.5e-55 218.0 192 54.2
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 8.5e-55 218.0 199 53.3
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 1.1e-54 217.6 210 47.1
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 1.4e-54 217.2 210 51.4
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 1.4e-54 217.2 196 53.1
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 1.9e-54 216.9 220 49.5
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 4.2e-54 215.7 194 51.0
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 4.2e-54 215.7 192 53.1
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 4.2e-54 215.7 196 51.0
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.2e-54 215.7 192 53.6
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 4.2e-54 215.7 202 53.0
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 5.5e-54 215.3 194 54.1
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 7.2e-54 214.9 192 52.6
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 7.2e-54 214.9 248 46.4
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 9.4e-54 214.5 189 54.0
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.2e-53 214.2 192 53.1
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.2e-53 214.2 189 54.5
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.2e-53 214.2 192 53.6
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.2e-53 214.2 221 48.4
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.6e-53 213.8 192 53.6
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 1.6e-53 213.8 208 48.6
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 2.1e-53 213.4 189 54.0
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 6.1e-53 211.8 192 51.6
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 6.1e-53 211.8 229 48.5
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 1.0e-52 211.1 188 53.2
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 1.0e-52 211.1 192 52.6
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 1.0e-52 211.1 189 52.9
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.4e-52 210.7 192 52.1
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 1.4e-52 210.7 192 53.1
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.3e-52 209.9 189 52.9
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 2.3e-52 209.9 196 52.0
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 3.0e-52 209.5 187 52.4
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 3.9e-52 209.1 196 49.5
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 3.9e-52 209.1 204 48.0
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 5.1e-52 208.8 276 41.3
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 5.1e-52 208.8 196 52.0
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 6.7e-52 208.4 197 52.3
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 6.7e-52 208.4 180 53.9
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 6.7e-52 208.4 181 55.8
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 8.8e-52 208.0 192 52.1
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 8.8e-52 208.0 227 46.7
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 8.8e-52 208.0 192 52.1
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 8.8e-52 208.0 192 50.5
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 8.8e-52 208.0 209 47.8
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 1.1e-51 207.6 248 45.2
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.1e-51 207.6 192 50.5
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 2.0e-51 206.8 192 51.0
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 2.5e-51 206.5 192 50.5
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 3.3e-51 206.1 227 46.7
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 3.3e-51 206.1 227 46.7
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.3e-51 206.1 196 50.0
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.3e-51 206.1 196 50.0
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 4.3e-51 205.7 192 50.5
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.7e-51 205.3 202 49.0
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 5.7e-51 205.3 192 50.5
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 5.7e-51 205.3 227 47.1
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 7.4e-51 204.9 248 44.4
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 7.4e-51 204.9 192 50.5
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 7.4e-51 204.9 192 51.0
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 9.7e-51 204.5 170 57.6
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 1.3e-50 204.1 210 46.2
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 2.2e-50 203.4 227 46.3
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 2.2e-50 203.4 227 46.3
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.8e-50 203.0 192 50.5
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 2.8e-50 203.0 253 45.5
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 4.8e-50 202.2 282 39.4
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.1e-49 201.1 235 45.5
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 1.8e-49 200.3 192 49.0
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 4.1e-49 199.1 184 51.6
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 4.1e-49 199.1 216 44.9
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 6.9e-49 198.4 183 53.0
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 9.1e-49 198.0 180 53.3
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 9.1e-49 198.0 248 42.3
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 2.9e-47 193.0 180 50.6
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.7e-45 186.4 174 51.7
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 6.7e-44 181.8 192 48.4
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 7.4e-43 178.3 304 36.5
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 1.3e-42 177.6 211 43.1
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.4e-41 174.1 148 53.4
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 1.4e-41 174.1 148 53.4
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 1.0e-39 167.9 152 51.3
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 8.8e-36 154.8 143 50.3
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.5e-35 154.1 192 44.3
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 9.7e-35 151.4 132 52.3
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 3.7e-34 149.4 131 55.0
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.4e-33 147.5 196 39.8
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 1.8e-33 147.1 133 51.9
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.0e-32 143.7 190 40.5
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 8.5e-31 138.3 128 51.6
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 9.4e-30 134.8 196 36.7
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 6.1e-29 132.1 196 40.8
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 8.8e-28 128.3 133 45.9
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 9.4e-22 108.2 106 47.2
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.0e-20 104.8 87 54.0
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 2.8e-18 96.7 87 51.7
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.2e-16 91.3 99 45.5
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 2.5e-14 83.6 81 45.7
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 2.8e-13 80.1 61 55.7
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.8e-13 80.1 181 29.8
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 2.6e-11 73.6 66 53.0
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 2.7e-08 63.5 52 57.7
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 8.6e-07 58.5 82 35.4
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.1e-06 58.2 39 56.4


User provided reference genes

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