Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 3.7e-95 351.7 193 100.0
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 1.7e-23 113.6 106 51.9
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 6.4e-23 111.7 109 50.5
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 1.2e-21 107.5 93 53.8
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 1.6e-21 107.1 93 53.8
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.6e-21 107.1 93 53.8
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 2.7e-21 106.3 93 53.8
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 3.5e-21 105.9 93 53.8
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 4.6e-21 105.5 93 53.8
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 4.6e-21 105.5 93 53.8
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 7.8e-21 104.8 95 51.6
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 7.8e-21 104.8 93 52.7
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 7.8e-21 104.8 93 52.7
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 7.8e-21 104.8 93 52.7
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 7.8e-21 104.8 93 55.9
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 1.0e-20 104.4 93 52.7
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 1.0e-20 104.4 93 53.8
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 1.0e-20 104.4 91 56.0
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 1.3e-20 104.0 93 52.7
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 1.3e-20 104.0 93 52.7
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 1.3e-20 104.0 93 52.7
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 1.3e-20 104.0 93 52.7
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.3e-20 104.0 93 51.6
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 1.3e-20 104.0 93 53.8
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 1.7e-20 103.6 93 52.7
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 1.7e-20 103.6 93 51.6
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 1.7e-20 103.6 93 54.8
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 1.7e-20 103.6 93 51.6
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 1.7e-20 103.6 93 51.6
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 2.3e-20 103.2 93 53.8
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.3e-20 103.2 93 53.8
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 2.3e-20 103.2 93 51.6
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 2.3e-20 103.2 93 52.7
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 2.3e-20 103.2 93 52.7
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 3.0e-20 102.8 134 41.8
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 3.9e-20 102.4 133 42.1
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 3.9e-20 102.4 100 49.0
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 3.9e-20 102.4 93 51.6
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 3.9e-20 102.4 104 47.1
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 5.0e-20 102.1 93 51.6
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 5.0e-20 102.1 93 52.7
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 5.0e-20 102.1 100 48.0
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 5.0e-20 102.1 93 50.5
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 5.0e-20 102.1 93 50.5
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 6.6e-20 101.7 93 50.5
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 6.6e-20 101.7 93 51.6
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 6.6e-20 101.7 93 51.6
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 6.6e-20 101.7 93 50.5
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 6.6e-20 101.7 93 51.6
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 6.6e-20 101.7 93 51.6
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 6.6e-20 101.7 93 51.6
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.1e-19 100.9 93 50.5
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 1.1e-19 100.9 93 51.6
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 1.1e-19 100.9 190 36.8
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 1.1e-19 100.9 93 51.6
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 1.5e-19 100.5 93 50.5
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.5e-19 100.5 181 39.2
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 1.5e-19 100.5 134 40.3
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 1.9e-19 100.1 103 47.6
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 1.9e-19 100.1 93 50.5
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 1.9e-19 100.1 93 50.5
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 1.9e-19 100.1 93 51.6
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 2.5e-19 99.8 93 51.6
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 2.5e-19 99.8 128 42.2
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 2.5e-19 99.8 93 50.5
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 2.5e-19 99.8 93 48.4
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 2.5e-19 99.8 93 50.5
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 3.3e-19 99.4 93 50.5
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 3.3e-19 99.4 93 49.5
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 3.3e-19 99.4 113 45.1
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 3.3e-19 99.4 93 50.5
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 3.3e-19 99.4 93 49.5
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 4.3e-19 99.0 93 49.5
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 4.3e-19 99.0 93 50.5
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 5.6e-19 98.6 196 37.2
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 5.6e-19 98.6 93 50.5
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 5.6e-19 98.6 93 49.5
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 5.6e-19 98.6 93 50.5
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 5.6e-19 98.6 161 37.3
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 5.6e-19 98.6 137 43.8
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 7.3e-19 98.2 93 48.4
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 7.3e-19 98.2 93 48.4
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 7.3e-19 98.2 87 51.7
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 9.5e-19 97.8 93 49.5
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 9.5e-19 97.8 93 49.5
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 1.2e-18 97.4 93 51.6
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 1.2e-18 97.4 93 49.5
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 1.2e-18 97.4 134 38.8
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.2e-18 97.4 95 48.4
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 1.2e-18 97.4 156 36.5
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 1.6e-18 97.1 93 50.5
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 1.6e-18 97.1 93 50.5
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 1.6e-18 97.1 93 49.5
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 1.6e-18 97.1 168 38.1
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 2.1e-18 96.7 129 41.1
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 2.1e-18 96.7 93 49.5
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 2.1e-18 96.7 93 49.5
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 2.1e-18 96.7 93 46.2
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 2.8e-18 96.3 84 51.2
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 4.7e-18 95.5 95 48.4
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 6.2e-18 95.1 92 46.7
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 8.1e-18 94.7 186 38.2
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 1.8e-17 93.6 164 37.8
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 5.2e-17 92.0 178 35.4
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 2.6e-16 89.7 178 36.5
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 2.9e-15 86.3 77 50.6
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 3.7e-15 85.9 94 47.9
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 4.9e-15 85.5 69 53.6
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 8.3e-15 84.7 199 33.7
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 1.7e-12 77.0 59 61.0
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.1e-11 74.3 79 45.6
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 3.3e-11 72.8 75 46.7
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 1.8e-09 67.0 54 55.6
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 1.1e-06 57.8 43 55.8


User provided reference genes

Program Settings