Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 7.0e-143 510.8 289 100.0
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.2e-25 121.3 185 38.9
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.6e-25 120.9 207 35.3
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 6.0e-25 119.0 193 37.8
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 7.8e-25 118.6 225 32.9
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 7.8e-25 118.6 225 32.9
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.3e-24 117.1 193 37.8
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 3.0e-24 116.7 189 36.5
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 8.6e-24 115.2 189 35.4
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 8.6e-24 115.2 193 37.3
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.1e-23 114.8 187 36.9
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.1e-23 114.8 187 36.4
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.5e-23 114.4 187 36.4
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 1.9e-23 114.0 221 33.5
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 3.3e-23 113.2 207 34.8
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 5.6e-23 112.5 189 36.0
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 7.3e-23 112.1 235 34.9
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 9.5e-23 111.7 188 37.2
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 9.5e-23 111.7 187 36.4
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 9.5e-23 111.7 235 34.9
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 9.5e-23 111.7 189 36.0
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.2e-22 111.3 186 34.9
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 1.2e-22 111.3 221 29.9
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.2e-22 111.3 213 34.3
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 1.6e-22 110.9 185 36.2
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.6e-22 110.9 188 35.6
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 2.1e-22 110.5 187 35.8
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 2.1e-22 110.5 187 35.8
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.1e-22 110.5 187 35.8
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 2.8e-22 110.2 237 34.2
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.8e-22 110.2 189 35.4
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 3.6e-22 109.8 189 34.9
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 3.6e-22 109.8 186 34.9
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 4.7e-22 109.4 212 34.0
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 4.7e-22 109.4 189 35.4
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 4.7e-22 109.4 187 34.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 8.1e-22 108.6 187 34.8
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.1e-21 108.2 186 34.9
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.1e-21 108.2 233 31.8
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 1.1e-21 108.2 187 35.8
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 1.4e-21 107.8 189 36.0
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.4e-21 107.8 186 36.0
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 1.4e-21 107.8 189 36.0
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.8e-21 107.5 189 33.9
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.3e-21 107.1 213 34.7
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.3e-21 107.1 186 34.4
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 3.1e-21 106.7 224 30.4
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 3.1e-21 106.7 187 34.2
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 3.1e-21 106.7 187 36.9
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 4.0e-21 106.3 189 35.4
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 4.0e-21 106.3 186 34.4
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 4.0e-21 106.3 188 33.5
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 4.0e-21 106.3 187 36.9
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 6.8e-21 105.5 190 34.7
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 8.9e-21 105.1 206 33.0
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.2e-20 104.8 196 34.2
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.2e-20 104.8 190 34.7
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.5e-20 104.4 243 29.6
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 1.5e-20 104.4 233 30.5
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 4.4e-20 102.8 183 33.3
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 5.8e-20 102.4 210 31.9
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 7.6e-20 102.1 244 29.9
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 7.6e-20 102.1 182 32.4
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 9.9e-20 101.7 179 34.6
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 9.9e-20 101.7 189 31.7
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 1.3e-19 101.3 244 29.9
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 1.7e-19 100.9 186 36.0
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 2.2e-19 100.5 160 36.2
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 2.9e-19 100.1 263 30.0
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 3.7e-19 99.8 186 34.4
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 3.7e-19 99.8 193 33.7
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 4.9e-19 99.4 176 34.1
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 4.9e-19 99.4 205 31.2
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 4.9e-19 99.4 198 32.8
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 4.9e-19 99.4 175 34.3
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 4.9e-19 99.4 189 32.3
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 6.4e-19 99.0 208 31.7
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 6.4e-19 99.0 199 31.2
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 8.3e-19 98.6 220 30.9
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.1e-18 98.2 181 33.7
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.1e-18 98.2 228 29.4
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.4e-18 97.1 227 30.0
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.4e-18 97.1 187 32.1
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 4.1e-18 96.3 242 31.0
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 7.1e-18 95.5 266 29.3
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 9.2e-18 95.1 149 36.9
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 2.1e-17 94.0 183 31.7
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 2.7e-17 93.6 185 31.4
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 4.6e-17 92.8 162 34.0
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 7.8e-17 92.0 141 38.3
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.7e-16 90.9 149 35.6
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.3e-16 90.5 184 33.7
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.3e-16 90.5 151 35.1
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.0e-16 90.1 149 33.6
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 3.0e-16 90.1 193 31.1
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 3.9e-16 89.7 154 36.4
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 3.9e-16 89.7 143 35.7
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 8.6e-16 88.6 149 35.6
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.1e-15 88.2 231 28.1
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.5e-15 87.8 209 28.7
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.9e-15 87.4 184 33.2
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 2.5e-15 87.0 141 34.8
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 3.3e-15 86.7 223 29.1
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 5.6e-15 85.9 189 29.6
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 7.3e-15 85.5 305 26.6
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.6e-14 84.3 240 27.1
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 2.1e-14 84.0 167 32.9
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 4.7e-14 82.8 141 34.8
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 8.1e-14 82.0 194 30.9
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 8.1e-14 82.0 137 35.0
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 8.1e-14 82.0 165 32.7
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.4e-13 81.3 191 29.8
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 1.8e-13 80.9 156 32.1
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 6.8e-13 79.0 195 29.7
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 6.8e-13 79.0 195 29.7
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 1.2e-12 78.2 195 30.3
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 1.2e-12 78.2 195 30.3
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 7.6e-12 75.5 130 35.4
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 7.6e-12 75.5 142 34.5
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 3.8e-11 73.2 159 30.2
PRCOL_00000045 Prasinoderma coloniale HOM05D005379 ORTHO05D006661 1.1e-10 71.6 179 29.6
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 1.4e-10 71.2 207 28.0
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 8.7e-08 62.0 100 35.0
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 3.6e-06 56.6 94 35.1


User provided reference genes

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