Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 2.8e-126 455.3 227 100.0
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 1.2e-41 174.1 192 41.1
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 1.2e-41 174.1 203 40.4
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 1.8e-40 170.2 203 40.9
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 4.0e-40 169.1 205 41.0
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 4.0e-40 169.1 209 40.7
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 6.7e-40 168.3 195 41.0
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 6.7e-40 168.3 215 40.5
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 8.8e-40 167.9 205 39.0
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 1.1e-39 167.5 216 40.3
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 2.6e-39 166.4 220 39.1
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 3.3e-39 166.0 214 39.3
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 3.3e-39 166.0 218 36.7
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 7.5e-39 164.9 216 39.4
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 7.5e-39 164.9 206 38.3
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 7.5e-39 164.9 208 38.5
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 9.7e-39 164.5 201 39.3
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 9.7e-39 164.5 211 40.3
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 9.7e-39 164.5 220 38.6
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 1.3e-38 164.1 205 39.0
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 2.2e-38 163.3 216 38.4
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 2.2e-38 163.3 212 38.2
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 2.8e-38 162.9 197 40.1
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 3.7e-38 162.5 200 37.5
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 3.7e-38 162.5 205 38.5
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 3.7e-38 162.5 200 37.5
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 3.7e-38 162.5 213 39.0
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 4.8e-38 162.2 213 38.5
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 4.8e-38 162.2 216 37.5
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 6.3e-38 161.8 208 38.5
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 6.3e-38 161.8 195 37.4
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 6.3e-38 161.8 204 36.8
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 8.2e-38 161.4 205 37.6
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 8.2e-38 161.4 216 37.0
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 8.2e-38 161.4 213 37.6
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 8.2e-38 161.4 204 36.8
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 1.1e-37 161.0 216 37.5
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.1e-37 161.0 216 37.0
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 1.1e-37 161.0 215 37.7
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 1.1e-37 161.0 215 38.6
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 1.1e-37 161.0 216 37.5
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.4e-37 160.6 216 37.0
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 1.4e-37 160.6 223 37.7
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 1.8e-37 160.2 207 37.2
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 1.8e-37 160.2 208 37.5
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 2.4e-37 159.8 201 38.3
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 2.4e-37 159.8 201 38.3
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 2.4e-37 159.8 213 36.6
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 2.4e-37 159.8 204 37.7
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 3.1e-37 159.5 208 37.5
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 4.1e-37 159.1 201 37.8
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 5.3e-37 158.7 198 37.9
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 5.3e-37 158.7 219 37.9
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 7.0e-37 158.3 198 37.9
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 7.0e-37 158.3 201 38.3
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 1.2e-36 157.5 205 38.0
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 1.2e-36 157.5 187 38.5
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 1.2e-36 157.5 219 37.4
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 1.2e-36 157.5 203 39.4
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 1.6e-36 157.1 204 37.7
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 2.0e-36 156.8 211 37.0
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 2.0e-36 156.8 213 36.6
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 2.6e-36 156.4 205 37.1
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 4.5e-36 155.6 206 37.4
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 4.5e-36 155.6 204 37.3
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 4.5e-36 155.6 204 37.7
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 5.9e-36 155.2 216 36.1
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 5.9e-36 155.2 214 36.4
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 7.7e-36 154.8 207 37.7
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.3e-35 154.1 195 36.9
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 1.7e-35 153.7 204 37.3
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 2.2e-35 153.3 203 36.0
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 2.2e-35 153.3 213 33.8
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 2.9e-35 152.9 209 37.3
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 2.9e-35 152.9 211 37.0
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 3.8e-35 152.5 209 37.3
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 5.0e-35 152.1 207 37.2
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 5.0e-35 152.1 214 38.3
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 1.5e-34 150.6 195 38.5
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 4.2e-34 149.1 211 36.0
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 7.2e-34 148.3 173 37.6
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 1.2e-33 147.5 198 36.9
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 1.2e-33 147.5 205 36.6
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 4.7e-33 145.6 228 34.2
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 6.1e-33 145.2 208 35.6
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 8.8e-32 141.4 176 38.1
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 1.2e-31 141.0 161 43.5
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 1.5e-31 140.6 169 39.1
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 5.7e-31 138.7 172 39.0
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 3.7e-30 136.0 152 42.8
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 6.3e-30 135.2 223 34.1
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 1.1e-29 134.4 177 36.2
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 1.0e-27 127.9 155 39.4
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.5e-26 124.0 164 38.4
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 3.2e-26 122.9 242 29.3
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 6.1e-25 118.6 203 34.5
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 2.0e-23 113.6 131 43.5
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 4.1e-21 105.9 122 44.3
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 3.5e-20 102.8 211 29.4
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 1.0e-19 101.3 192 29.7
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 2.9e-19 99.8 106 46.2
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 5.6e-18 95.5 128 37.5
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 2.1e-17 93.6 147 36.7
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 6.1e-17 92.0 128 32.8
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 6.4e-14 82.0 102 38.2
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 1.4e-13 80.9 103 35.0
CBR_g50885 Chara braunii HOM05D006727 ORTHO05D008408 5.9e-12 75.5 121 31.4
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 3.0e-11 73.2 58 51.7
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 8.6e-11 71.6 74 43.2
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 1.1e-10 71.2 74 43.2
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 2.5e-10 70.1 128 33.6
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 1.2e-09 67.8 128 32.8
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 2.6e-07 60.1 58 43.1
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.4e-07 59.7 50 44.0
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 3.4e-07 59.7 82 35.4


User provided reference genes

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