Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 1.5e-133 479.6 242 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 1.2e-15 87.8 149 28.9
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 6.1e-15 85.5 147 32.7
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.8e-14 84.0 176 27.8
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.3e-14 83.6 213 27.2
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 4.0e-14 82.8 147 32.7
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 8.8e-14 81.6 149 31.5
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 1.2e-13 81.3 151 30.5
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 1.5e-13 80.9 151 30.5
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 2.0e-13 80.5 151 29.8
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 2.6e-13 80.1 166 31.9
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 3.4e-13 79.7 155 29.0
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 4.4e-13 79.3 143 32.2
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 5.7e-13 79.0 154 31.8
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 5.7e-13 79.0 150 32.7
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 7.5e-13 78.6 157 29.9
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 7.5e-13 78.6 152 30.9
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 7.5e-13 78.6 149 29.5
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.3e-12 77.8 148 32.4
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 1.7e-12 77.4 160 28.8
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 3.7e-12 76.3 150 30.0
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.7e-12 76.3 143 30.8
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 3.7e-12 76.3 148 29.1
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 3.7e-12 76.3 150 30.0
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 4.9e-12 75.9 151 29.1
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 4.9e-12 75.9 143 30.8
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 4.9e-12 75.9 147 29.3
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 6.3e-12 75.5 147 29.3
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 6.3e-12 75.5 154 29.9
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 6.3e-12 75.5 151 29.8
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 8.3e-12 75.1 147 30.6
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 1.1e-11 74.7 148 29.1
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 1.4e-11 74.3 148 31.1
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 1.4e-11 74.3 145 31.7
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 1.4e-11 74.3 151 29.1
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 2.4e-11 73.6 157 29.3
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 2.4e-11 73.6 148 29.1
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 2.4e-11 73.6 149 28.9
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 3.1e-11 73.2 147 28.6
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 3.1e-11 73.2 148 29.1
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 3.1e-11 73.2 147 27.9
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 4.1e-11 72.8 147 29.3
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 4.1e-11 72.8 147 29.3
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 5.4e-11 72.4 145 28.3
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 5.4e-11 72.4 151 28.5
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 7.0e-11 72.0 148 29.1
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 7.0e-11 72.0 147 29.3
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 7.0e-11 72.0 143 30.8
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 7.0e-11 72.0 148 27.7
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 7.0e-11 72.0 144 30.6
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 7.0e-11 72.0 151 27.8
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 7.0e-11 72.0 150 30.0
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 9.2e-11 71.6 148 29.1
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 9.2e-11 71.6 147 27.9
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 9.2e-11 71.6 148 28.4
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 1.2e-10 71.2 146 28.8
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.2e-10 71.2 153 27.5
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 1.2e-10 71.2 148 28.4
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 1.6e-10 70.9 148 27.0
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.6e-10 70.9 153 28.1
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.6e-10 70.9 147 27.9
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 2.0e-10 70.5 155 26.5
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 2.7e-10 70.1 144 29.9
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.7e-10 70.1 142 29.6
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 3.5e-10 69.7 153 27.5
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 3.5e-10 69.7 151 27.2
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 4.5e-10 69.3 150 28.7
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 5.9e-10 68.9 148 28.4
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 5.9e-10 68.9 136 28.7
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 5.9e-10 68.9 153 26.8
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 7.7e-10 68.6 141 28.4
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 7.7e-10 68.6 148 29.1
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 1.3e-09 67.8 151 27.2
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.7e-09 67.4 143 26.6
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 1.7e-09 67.4 151 27.2
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 1.7e-09 67.4 142 26.8
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 2.3e-09 67.0 147 27.9
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 2.3e-09 67.0 149 28.9
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 2.3e-09 67.0 149 28.9
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 2.3e-09 67.0 145 26.9
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 2.9e-09 66.6 156 27.6
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 2.9e-09 66.6 143 26.6
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 3.8e-09 66.2 149 28.2
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 3.8e-09 66.2 149 28.2
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 3.8e-09 66.2 102 31.4
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 5.0e-09 65.9 141 27.7
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 8.6e-09 65.1 143 26.6
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 8.6e-09 65.1 147 28.6
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 1.1e-08 64.7 148 27.0
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 1.5e-08 64.3 130 30.8
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 3.3e-08 63.2 165 27.3
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 3.3e-08 63.2 123 28.5
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 4.3e-08 62.8 98 31.6
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.3e-08 62.8 115 28.7
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 7.3e-08 62.0 121 29.8
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 9.5e-08 61.6 179 26.8
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 3.6e-07 59.7 143 23.8
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 4.7e-07 59.3 125 24.8
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 6.1e-07 58.9 114 29.8
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 8.9e-06 55.1 91 36.3


User provided reference genes

Program Settings