Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g047218 Chlamydomonas reinhardtii HOM05D002522 ORTHO05D144047 2.0e-192 676.0 461 100.0
Nitab4.5_0003291g0070 Nicotiana tabacum HOM05D002522 ORTHO05D002744 3.9e-10 70.5 77 42.9
Hund20119 Selenicereus undatus HOM05D002522 ORTHO05D002744 3.9e-10 70.5 77 41.6
PSO541G2937 Papaver somniferum HOM05D002522 ORTHO05D002744 5.1e-10 70.1 77 40.3
Atru.chr1.69 Acer truncatum HOM05D002522 ORTHO05D002744 6.6e-10 69.7 77 41.6
Aqoxy1G01405 Aquilegia oxysepala HOM05D002522 ORTHO05D002744 8.7e-10 69.3 88 37.5
MSTRG.14570 Avicennia marina HOM05D002522 ORTHO05D002744 1.1e-09 68.9 87 36.8
DCAR_016848 Daucus carota HOM05D002522 ORTHO05D002744 1.1e-09 68.9 87 40.2
Sed0014231 Sechium edule HOM05D002522 ORTHO05D002744 1.1e-09 68.9 87 39.1
Carub.0002s2637 Capsella rubella HOM05D002522 ORTHO05D002744 1.5e-09 68.6 81 37.0
PSO675G5855 Papaver somniferum HOM05D002522 ORTHO05D002744 1.5e-09 68.6 77 40.3
BcaB02g07219 Brassica carinata HOM05D002522 ORTHO05D002744 1.9e-09 68.2 87 34.5
THA.LOC104808135 Tarenaya hassleriana HOM05D002522 ORTHO05D002744 1.9e-09 68.2 77 40.3
Thecc.07G187600 Theobroma cacao HOM05D002522 ORTHO05D002744 1.9e-09 68.2 77 42.9
AL2G40130 Arabidopsis lyrata HOM05D002522 ORTHO05D002744 2.5e-09 67.8 81 35.8
AL891U10010 Arabidopsis lyrata HOM05D002522 ORTHO05D002744 2.5e-09 67.8 81 35.8
BcaC08g45350 Brassica carinata HOM05D002522 ORTHO05D002744 2.5e-09 67.8 87 34.5
C05p14490 Brassica napus HOM05D002522 ORTHO05D002744 2.5e-09 67.8 77 39.0
BolC5t30174H Brassica oleracea HOM05D002522 ORTHO05D002744 2.5e-09 67.8 77 39.0
BolC6t38146H Brassica oleracea HOM05D002522 ORTHO05D002744 2.5e-09 67.8 87 34.5
BraA07t30355Z Brassica rapa HOM05D002522 ORTHO05D002744 2.5e-09 67.8 87 34.5
ClCG11G008240 Citrullus lanatus HOM05D002522 ORTHO05D002744 2.5e-09 67.8 77 41.6
CsaV3_2G033420 Cucumis sativus L. HOM05D002522 ORTHO05D002744 2.5e-09 67.8 77 41.6
Duzib268G1315 Durio zibethinus HOM05D002522 ORTHO05D002744 2.5e-09 67.8 77 41.6
Lsat_1_v5_gn_7_110880 Lactuca sativa HOM05D002522 ORTHO05D002744 2.5e-09 67.8 84 38.1
Manes.16G047400 Manihot esculenta HOM05D002522 ORTHO05D002744 2.5e-09 67.8 86 37.2
Sp5g34560 Schrenkiella parvula HOM05D002522 ORTHO05D002744 2.5e-09 67.8 81 37.0
arahy.Tifrunner.gnm1.ann1.U3578E Arachis hypogaea HOM05D002522 ORTHO05D002744 3.3e-09 67.4 77 39.0
Cpa.g.sc32.76 Carica papaya HOM05D002522 ORTHO05D002744 3.3e-09 67.4 77 42.9
AT1G79510 Arabidopsis thaliana HOM05D002522 ORTHO05D002744 4.3e-09 67.0 77 37.7
Carub.0001s1606 Capsella rubella HOM05D002522 ORTHO05D002744 4.3e-09 67.0 87 34.5
Cc05_g16510 Coffea canephora HOM05D002522 ORTHO05D002744 4.3e-09 67.0 82 39.0
Eucgr.A00003 Eucalyptus grandis HOM05D002522 ORTHO05D002744 4.3e-09 67.0 87 36.8
Sp1g14510 Schrenkiella parvula HOM05D002522 ORTHO05D002744 4.3e-09 67.0 77 39.0
unitig_578.g16051 Utricularia gibba HOM05D002522 ORTHO05D002744 4.3e-09 67.0 87 36.8
AL1G28440 Arabidopsis lyrata HOM05D002522 ORTHO05D002744 5.6e-09 66.6 87 34.5
BcaB02g06611 Brassica carinata HOM05D002522 ORTHO05D002744 5.6e-09 66.6 77 39.0
Ciclev10005641m.g Citrus clementina HOM05D002522 ORTHO05D002744 5.6e-09 66.6 77 41.6
COL.COLO4_04572 Corchorus olitorius HOM05D002522 ORTHO05D002744 5.6e-09 66.6 77 40.3
MELO3C008114.2 Cucumis melo HOM05D002522 ORTHO05D002744 5.6e-09 66.6 77 41.6
Thhalv10019001m.g Eutrema salsugineum HOM05D002522 ORTHO05D002744 5.6e-09 66.6 77 37.7
HanXRQChr11g0321941 Helianthus annuus HOM05D002522 ORTHO05D002744 5.6e-09 66.6 84 38.1
A07p27100 Brassica napus HOM05D002522 ORTHO05D002744 7.3e-09 66.2 87 34.5
CDE02G2738 Ceratophyllum demersum HOM05D002522 ORTHO05D002744 7.3e-09 66.2 87 37.9
DCAR_013718 Daucus carota HOM05D002522 ORTHO05D002744 7.3e-09 66.2 77 39.0
Thhalv10008440m.g Eutrema salsugineum HOM05D002522 ORTHO05D002744 7.3e-09 66.2 77 37.7
AT1G16320 Arabidopsis thaliana HOM05D002522 ORTHO05D002744 9.6e-09 65.9 87 33.3
CANSAT56G2893 Cannabis sativa HOM05D002522 ORTHO05D002744 9.6e-09 65.9 87 39.1
Cfa019384 Carpinus fangiana HOM05D002522 ORTHO05D002744 9.6e-09 65.9 77 39.0
ECA236G2071 Erigeron canadensis HOM05D002522 ORTHO05D002744 9.6e-09 65.9 84 35.7
Medtr8g046460 Medicago truncatula HOM05D002522 ORTHO05D002744 9.6e-09 65.9 77 40.3
arahy.Tifrunner.gnm1.ann1.05C3SW Arachis hypogaea HOM05D002522 ORTHO05D002744 1.2e-08 65.5 77 37.7
BcaC05g25583 Brassica carinata HOM05D002522 ORTHO05D002744 1.2e-08 65.5 77 37.7
A06p12240 Brassica napus HOM05D002522 ORTHO05D002744 1.2e-08 65.5 77 37.7
BraA06t24392Z Brassica rapa HOM05D002522 ORTHO05D002744 1.2e-08 65.5 77 37.7
CARHR016790 Cardamine hirsuta HOM05D002522 ORTHO05D002744 1.2e-08 65.5 77 36.4
Hma1.2p1_0151F.1_g067130 Hydrangea macrophylla HOM05D002522 ORTHO05D002744 1.2e-08 65.5 77 37.7
Lj3g0021491 Lotus japonicus HOM05D002522 ORTHO05D002744 1.2e-08 65.5 77 40.3
PGR042G2959 Punica granatum HOM05D002522 ORTHO05D002744 1.2e-08 65.5 77 40.3
GSVIVG01036740001 Vitis vinifera HOM05D002522 ORTHO05D002744 1.2e-08 65.5 77 39.0
Duzib187G0591 Durio zibethinus HOM05D002522 ORTHO05D002744 1.6e-08 65.1 77 39.0
Lalb_Chr25g0284441 Lupinus albus HOM05D002522 ORTHO05D002744 1.6e-08 65.1 77 37.7
MD05G1235700 Malus domestica HOM05D002522 ORTHO05D002744 1.6e-08 65.1 77 39.0
Psat4g170520 Pisum sativum HOM05D002522 ORTHO05D002744 1.6e-08 65.1 87 36.8
Potri.010G173000 Populus trichocarpa HOM05D002522 ORTHO05D002744 1.6e-08 65.1 77 39.0
QL04p091467 Quercus lobata HOM05D002522 ORTHO05D002744 1.6e-08 65.1 77 39.0
QL04p092859 Quercus lobata HOM05D002522 ORTHO05D002744 1.6e-08 65.1 77 39.0
Rhsim06G0243400 Rhododendron simsii HOM05D002522 ORTHO05D002744 1.6e-08 65.1 77 40.3
THA.LOC104813605 Tarenaya hassleriana HOM05D002522 ORTHO05D002744 1.6e-08 65.1 77 37.7
TPR.G9406 Trifolium pratense HOM05D002522 ORTHO05D002744 1.6e-08 65.1 77 39.0
TAR624G0110 Trochodendron aralioides HOM05D002522 ORTHO05D002744 1.6e-08 65.1 84 36.9
HPP92_016696 Vanilla planifolia HOM05D002522 ORTHO05D002744 1.6e-08 65.1 88 37.5
Dinv42468 Davidia involucrata HOM05D000870 ORTHO05D000715 2.1e-08 64.7 77 36.4
Oeu026001.1 Olea europaea HOM05D002522 ORTHO05D002744 2.1e-08 64.7 77 40.3
Sabra10G0132500 Salix brachista HOM05D002522 ORTHO05D002744 2.1e-08 64.7 77 39.0
HPP92_011008 Vanilla planifolia HOM05D002522 ORTHO05D002744 2.1e-08 64.7 84 36.9
Zm00001eb430750 Zea mays HOM05D002522 ORTHO05D002744 2.1e-08 64.7 82 41.5
BcaB03g13043 Brassica carinata HOM05D002522 ORTHO05D002744 2.8e-08 64.3 77 36.4
CSS0011899 Camellia sinensis var. sinensis HOM05D002522 ORTHO05D002744 2.8e-08 64.3 77 41.6
CARHR073170 Cardamine hirsuta HOM05D002522 ORTHO05D002744 2.8e-08 64.3 81 33.3
Glyma.15G262600 Glycine max HOM05D002522 ORTHO05D002744 2.8e-08 64.3 87 33.3
Lj2C12T15 Lonicera japonica HOM05D002522 ORTHO05D002744 2.8e-08 64.3 77 37.7
MD10G1212200 Malus domestica HOM05D002522 ORTHO05D002744 2.8e-08 64.3 77 40.3
Oeu005066.1 Olea europaea HOM05D002522 ORTHO05D002744 2.8e-08 64.3 88 37.5
Phvul.011G178900 Phaseolus vulgaris HOM05D002522 ORTHO05D002744 2.8e-08 64.3 77 39.0
Prupe.4G130800 Prunus persica HOM05D002522 ORTHO05D002744 2.8e-08 64.3 77 39.0
TWI38G2021 Tripterygium wilfordii HOM05D002522 ORTHO05D002744 2.8e-08 64.3 77 40.3
VMungo1127G0604 Vigna mungo HOM05D002522 ORTHO05D002744 2.8e-08 64.3 77 39.0
Zm00001eb070970 Zea mays HOM05D002522 ORTHO05D002744 2.8e-08 64.3 82 41.5
Aa31LG7G840 Aethionema arabicum HOM05D002522 ORTHO05D002744 3.6e-08 63.9 77 35.1
Migut.H01659 Erythranthe guttata HOM05D002522 ORTHO05D002744 3.6e-08 63.9 86 34.9
Glyma.08G235000 Glycine max HOM05D002522 ORTHO05D002744 3.6e-08 63.9 77 39.0
RcHm_v2.0_Chr5g0023911 Rosa chinensis HOM05D002522 ORTHO05D002744 3.6e-08 63.9 77 39.0
SEGI_31894 Sequoiadendron giganteum HOM05D002522 ORTHO05D002744 3.6e-08 63.9 77 35.1
CiPaw.11G058300 Carya illinoinensis HOM05D002522 ORTHO05D002744 4.7e-08 63.5 86 37.2
FvH4_3g14540 Fragaria vesca HOM05D002522 ORTHO05D002744 4.7e-08 63.5 77 39.0
FAN11G2418 Fragaria x ananassa HOM05D002522 ORTHO05D002744 4.7e-08 63.5 77 39.0
FAN16G0978 Fragaria x ananassa HOM05D002522 ORTHO05D002744 4.7e-08 63.5 77 39.0
FAN21G0183 Fragaria x ananassa HOM05D002522 ORTHO05D002744 4.7e-08 63.5 77 39.0
FAN25G2834 Fragaria x ananassa HOM05D002522 ORTHO05D002744 4.7e-08 63.5 77 39.0
Os04g0613300 Oryza sativa ssp. japonica HOM05D002522 ORTHO05D002744 4.7e-08 63.5 75 40.0
Phvul.005G049000 Phaseolus vulgaris HOM05D002522 ORTHO05D002744 4.7e-08 63.5 77 33.8
Psat1g011600 Pisum sativum HOM05D002522 ORTHO05D002744 4.7e-08 63.5 77 35.1
TPR.G27464 Trifolium pratense HOM05D002522 ORTHO05D002744 4.7e-08 63.5 77 35.1
Lj3g0009024 Lotus japonicus HOM05D002522 ORTHO05D002744 8.1e-08 62.8 77 36.4
Sabra08G0061700 Salix brachista HOM05D002522 ORTHO05D002744 8.1e-08 62.8 77 37.7
VMungo1080G0531 Vigna mungo HOM05D002522 ORTHO05D002744 1.1e-07 62.4 77 33.8
Glyma.08G164500 Glycine max HOM05D002522 ORTHO05D002744 1.4e-07 62.0 87 31.0
Medtr2g064370 Medicago truncatula HOM05D002522 ORTHO05D002744 1.8e-07 61.6 77 35.1
ATR0329G068 Amborella trichopoda HOM05D002522 ORTHO05D002744 2.4e-07 61.2 85 34.1
TAR629G0280 Trochodendron aralioides HOM05D002522 ORTHO05D002744 2.4e-07 61.2 77 39.0
Pp3c1_3310 Physcomitrium patens HOM05D002522 ORTHO05D002744 6.9e-07 59.7 86 31.4
SEGI_21370 Sequoiadendron giganteum HOM05D002522 ORTHO05D002744 9.0e-07 59.3 77 36.4
CBR_g20268 Chara braunii HOM05D002522 ORTHO05D002744 1.2e-06 58.9 77 33.8
Zm00001eb119660 Zea mays HOM05D002522 ORTHO05D002744 1.2e-06 58.9 77 35.1
Pp3c11_4620 Physcomitrium patens HOM05D002522 ORTHO05D002744 2.6e-06 57.8 77 35.1
SMO307G0010 Selaginella moellendorffii HOM05D002522 ORTHO05D002744 2.6e-06 57.8 75 37.3
Lalb_Chr04g0261811 Lupinus albus HOM05D002522 ORTHO05D002744 3.4e-06 57.4 77 32.5
Mapoly0082s0009 Marchantia polymorpha HOM05D002522 ORTHO05D002744 3.4e-06 57.4 86 32.6
MCO04G324 Micromonas commoda HOM05D002522 ORTHO05D002744 3.4e-06 57.4 84 36.9
TWI59G0857 Tripterygium wilfordii HOM05D002522 ORTHO05D002744 3.4e-06 57.4 77 35.1
PRCOL_00005450 Prasinoderma coloniale HOM05D002522 ORTHO05D002744 4.4e-06 57.0 95 34.7
SMO014G0031 Selaginella moellendorffii HOM05D002522 ORTHO05D002744 4.4e-06 57.0 75 34.7
CDE04G1514 Ceratophyllum demersum HOM05D002522 ORTHO05D002744 7.6e-06 56.2 84 32.1
Oeu054365.1 Olea europaea HOM05D002522 ORTHO05D002744 7.6e-06 56.2 87 32.2
Sc23g0002460 Simmondsia chinensis HOM05D002522 ORTHO05D002744 7.6e-06 56.2 77 35.1
Atru.chr5.602 Acer truncatum HOM05D002522 ORTHO05D002744 9.9e-06 55.8 77 32.5
arahy.Tifrunner.gnm1.ann1.9XT8EU Arachis hypogaea HOM05D002522 ORTHO05D002744 9.9e-06 55.8 88 29.5
Cpa.g.sc184.15 Carica papaya HOM05D002522 ORTHO05D002744 9.9e-06 55.8 77 32.5
Zm00001eb338880 Zea mays HOM05D002522 ORTHO05D002744 9.9e-06 55.8 88 33.0


User provided reference genes

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