Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g040300 Chlamydomonas reinhardtii HOM05D031665 ORTHO05D031133 5.3e-193 677.6 349 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3184 Anthoceros agrestis HOM05D031665 ORTHO05D031133 5.2e-84 315.5 327 48.6
PRCOL_00007046 Prasinoderma coloniale HOM05D031665 ORTHO05D031133 1.8e-44 184.1 289 40.1
Migut.A00398 Erythranthe guttata HOM05D000573 ORTHO05D000425 7.0e-12 75.9 165 32.7
MCO04G410 Micromonas commoda HOM05D009553 ORTHO05D011773 9.1e-12 75.5 192 28.6
SalBow4G0535 Salvia bowleyana HOM05D000573 ORTHO05D000425 1.0e-10 72.0 139 32.4
MCO15G080 Micromonas commoda HOM05D000573 ORTHO05D000425 1.7e-10 71.2 139 33.1
BcaC07g42625 Brassica carinata HOM05D000573 ORTHO05D000425 2.9e-10 70.5 165 30.9
Mapoly0138s0002 Marchantia polymorpha HOM05D009553 ORTHO05D011773 2.9e-10 70.5 213 25.4
BcaC07g40696 Brassica carinata HOM05D000573 ORTHO05D000425 3.8e-10 70.1 165 30.9
C08p36960 Brassica napus HOM05D000573 ORTHO05D000425 3.8e-10 70.1 165 30.9
MD05G1209400 Malus domestica HOM05D000573 ORTHO05D000425 3.8e-10 70.1 153 31.4
A09p54070 Brassica napus HOM05D000573 ORTHO05D000425 5.0e-10 69.7 165 30.9
BolC8t51272H Brassica oleracea HOM05D000573 ORTHO05D000425 5.0e-10 69.7 165 30.9
BraA09t40820Z Brassica rapa HOM05D000573 ORTHO05D000425 5.0e-10 69.7 165 30.9
PRCOL_00005813 Prasinoderma coloniale HOM05D000573 ORTHO05D000425 8.6e-10 68.9 137 30.7
HPP92_005323 Vanilla planifolia HOM05D000573 ORTHO05D000425 1.1e-09 68.6 140 30.7
Cc02_g30340 Coffea canephora HOM05D000573 ORTHO05D000425 1.5e-09 68.2 166 30.1
Pp3c4_20870 Physcomitrium patens HOM05D000573 ORTHO05D000425 4.2e-09 66.6 139 32.4
AagrBONN_evm.TU.Sc2ySwM_340.1452 Anthoceros agrestis HOM05D000573 ORTHO05D000425 7.2e-09 65.9 139 32.4
SMO203G0272 Selaginella moellendorffii HOM05D009553 ORTHO05D011773 7.2e-09 65.9 192 29.2
Pp3c9_19340 Physcomitrium patens HOM05D009553 ORTHO05D011773 9.5e-09 65.5 229 27.5
SEGI_07312 Sequoiadendron giganteum HOM05D009553 ORTHO05D011773 9.5e-09 65.5 194 28.9
Ah.02g112180 Amaranthus hybridus HOM05D000573 ORTHO05D000425 1.2e-08 65.1 152 30.3
AUR62036299 Chenopodium quinoa HOM05D000573 ORTHO05D000425 1.2e-08 65.1 139 32.4
AUR62038410 Chenopodium quinoa HOM05D000573 ORTHO05D008677 1.2e-08 65.1 139 32.4
CDE12G0122 Ceratophyllum demersum HOM05D000573 ORTHO05D000425 2.8e-08 63.9 152 30.3
Zm00001eb416160 Zea mays HOM05D000573 ORTHO05D000425 2.8e-08 63.9 165 29.1
SMO116G0323 Selaginella moellendorffii HOM05D009553 ORTHO05D011773 4.7e-08 63.2 190 27.4
SEGI_08824 Sequoiadendron giganteum HOM05D009553 ORTHO05D011773 6.1e-08 62.8 159 30.2
SEGI_07143 Sequoiadendron giganteum HOM05D009553 ORTHO05D011773 8.0e-08 62.4 217 24.0
AagrBONN_evm.TU.Sc2ySwM_117.540 Anthoceros agrestis HOM05D009553 ORTHO05D011773 1.0e-07 62.0 182 27.5
SEGI_33499 Sequoiadendron giganteum HOM05D009553 ORTHO05D011773 1.0e-07 62.0 193 28.0
Zm00001eb199470 Zea mays HOM05D000573 ORTHO05D000425 1.0e-07 62.0 168 27.4
Phvul.003G242350 Phaseolus vulgaris HOM05D000573 ORTHO05D000425 2.3e-07 60.8 157 26.1
SEGI_03955 Sequoiadendron giganteum HOM05D009553 ORTHO05D011773 2.3e-07 60.8 179 29.1
SEGI_14017 Sequoiadendron giganteum HOM05D009553 ORTHO05D011773 2.3e-07 60.8 217 23.5
SEGI_35778 Sequoiadendron giganteum HOM05D009553 ORTHO05D011773 2.3e-07 60.8 217 23.5
Thecc.01G329200 Theobroma cacao HOM05D000573 ORTHO05D000425 2.3e-07 60.8 166 28.9
PGR042G2428 Punica granatum HOM05D000573 ORTHO05D000425 3.0e-07 60.5 183 27.9
Gohir.A12G118500 Gossypium hirsutum HOM05D000573 ORTHO05D000425 4.0e-07 60.1 166 29.5
CANSAT56G0351 Cannabis sativa HOM05D000573 ORTHO05D000425 5.2e-07 59.7 166 28.3
Gohir.D12G122300 Gossypium hirsutum HOM05D000573 ORTHO05D000425 1.2e-06 58.5 153 29.4
Phvul.003G242401 Phaseolus vulgaris HOM05D000573 ORTHO05D000425 1.2e-06 58.5 158 25.9
Os08g0154000 Oryza sativa ssp. japonica HOM05D000573 ORTHO05D000425 1.5e-06 58.2 152 28.9
Zm00001eb199490 Zea mays HOM05D000573 ORTHO05D000425 2.0e-06 57.8 137 28.5
Glyma.17G171100 Glycine max HOM05D000573 ORTHO05D000425 2.6e-06 57.4 156 26.3
Gorai.008G133100 Gossypium raimondii HOM05D000573 ORTHO05D000425 2.6e-06 57.4 153 29.4
Pp3c23_5530 Physcomitrium patens HOM05D000573 ORTHO05D000425 2.6e-06 57.4 156 24.4
Duzib138G0303 Durio zibethinus HOM05D000573 ORTHO05D000425 3.4e-06 57.0 166 28.9
Cfa025341 Carpinus fangiana HOM05D009553 ORTHO05D011773 4.4e-06 56.6 167 28.1
COL.COLO4_23083 Corchorus olitorius HOM05D000573 ORTHO05D000425 4.4e-06 56.6 140 29.3
Eucgr.F04260 Eucalyptus grandis HOM05D000573 ORTHO05D000425 4.4e-06 56.6 140 30.0
PRCOL_00003106 Prasinoderma coloniale HOM05D009553 ORTHO05D011773 4.4e-06 56.6 208 27.9


User provided reference genes

Program Settings