Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g040250 Chlamydomonas reinhardtii HOM05D004490 ORTHO05D005353 2.7e-249 865.5 659 100.0
PRCOL_00002362 Prasinoderma coloniale HOM05D004490 ORTHO05D005353 1.0e-33 149.4 356 35.4
Zm00001eb427930 Zea mays HOM05D004490 ORTHO05D005353 4.8e-28 130.6 519 27.6
CBR_g58400 Chara braunii HOM05D004490 ORTHO05D005353 1.0e-25 122.9 441 29.7
Os01g0521500 Oryza sativa ssp. japonica HOM05D004490 ORTHO05D005353 9.4e-24 116.3 664 25.5
Pp3c14_7350 Physcomitrium patens HOM05D004490 ORTHO05D005353 1.6e-23 115.5 279 37.6
Solyc11g018670.3 Solanum lycopersicum HOM05D004490 ORTHO05D005353 6.1e-23 113.6 278 34.2
Sopen11g009650 Solanum pennellii HOM05D004490 ORTHO05D005353 6.1e-23 113.6 275 33.8
Ciclev10000724m.g Citrus clementina HOM05D004490 ORTHO05D005353 8.0e-23 113.2 445 28.3
Migut.C01248 Erythranthe guttata HOM05D004490 ORTHO05D005353 8.0e-23 113.2 419 27.9
Mapoly0003s0077 Marchantia polymorpha HOM05D004490 ORTHO05D005353 1.0e-22 112.8 303 33.3
CANSAT64G2929 Cannabis sativa HOM05D004490 ORTHO05D005353 5.2e-22 110.5 522 26.2
Lj7A289G25 Lonicera japonica HOM05D004490 ORTHO05D005353 5.2e-22 110.5 656 24.8
MCO12G010 Micromonas commoda HOM05D004490 ORTHO05D005353 5.2e-22 110.5 536 29.7
MSTRG.1522 Avicennia marina HOM05D004490 ORTHO05D005353 6.7e-22 110.2 424 27.1
Aqoxy2G03181 Aquilegia oxysepala HOM05D004490 ORTHO05D005353 8.8e-22 109.8 419 28.6
Lalb_Chr21g0305821 Lupinus albus HOM05D004490 ORTHO05D005353 8.8e-22 109.8 427 28.1
Cpa.g.sc66.44 Carica papaya HOM05D004490 ORTHO05D005353 1.1e-21 109.4 319 30.1
MD04G1003500 Malus domestica HOM05D004490 ORTHO05D005353 2.6e-21 108.2 278 33.1
Oeu021013.3 Olea europaea HOM05D004490 ORTHO05D005353 2.6e-21 108.2 175 38.9
CAN.G905.35 Capsicum annuum HOM05D004490 ORTHO05D005353 5.7e-21 107.1 278 33.1
RcHm_v2.0_Chr4g0398261 Rosa chinensis HOM05D004490 ORTHO05D005353 5.7e-21 107.1 505 26.3
SalBow7G0993 Salvia bowleyana HOM05D004490 ORTHO05D005353 7.4e-21 106.7 445 27.9
vmacro11670 Vaccinium macrocarpon HOM05D004490 ORTHO05D005353 7.4e-21 106.7 303 32.7
SalBow4G3000 Salvia bowleyana HOM05D004490 ORTHO05D005353 1.3e-20 105.9 445 27.9
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 1.7e-20 105.5 280 34.6
Cc10_g11460 Coffea canephora HOM05D004490 ORTHO05D005353 1.7e-20 105.5 424 27.4
PGR102G0893 Punica granatum HOM05D004490 ORTHO05D005353 1.7e-20 105.5 664 25.6
TAR208G0002 Trochodendron aralioides HOM05D004490 ORTHO05D005353 1.7e-20 105.5 419 28.4
Peaxi162Scf00848g00115 Petunia axillaris HOM05D004490 ORTHO05D005353 2.2e-20 105.1 425 27.5
RcHm_v2.0_Chr5g0082081 Rosa chinensis HOM05D004490 ORTHO05D005353 2.2e-20 105.1 281 37.0
Duzib177G0006 Durio zibethinus HOM05D004490 ORTHO05D005353 2.8e-20 104.8 648 24.1
FAN12G1529 Fragaria x ananassa HOM05D004490 ORTHO05D005353 3.7e-20 104.4 424 28.1
Potri.019G083700 Populus trichocarpa HOM05D004490 ORTHO05D005353 3.7e-20 104.4 325 30.5
SHI54375 Sapria himalayana HOM05D004490 ORTHO05D005353 3.7e-20 104.4 187 35.3
HPP92_020159 Vanilla planifolia HOM05D004490 ORTHO05D005353 3.7e-20 104.4 275 33.8
arahy.Tifrunner.gnm1.ann1.90XUFN Arachis hypogaea HOM05D004490 ORTHO05D005353 4.8e-20 104.0 303 32.3
Atru.chr12.1269 Acer truncatum HOM05D004490 ORTHO05D005353 6.3e-20 103.6 419 27.7
FvH4_4g06470 Fragaria vesca HOM05D004490 ORTHO05D005353 8.2e-20 103.2 424 28.1
Nitab4.5_0000277g0020 Nicotiana tabacum HOM05D004490 ORTHO05D005353 8.2e-20 103.2 329 36.8
Sp6g08010 Schrenkiella parvula HOM05D004490 ORTHO05D005353 8.2e-20 103.2 420 33.1
SGA_v2.0_scaffold118G32473 Striga asiatica HOM05D004490 ORTHO05D005353 8.2e-20 103.2 298 34.6
Cfa018184 Carpinus fangiana HOM05D004490 ORTHO05D005353 1.1e-19 102.8 447 28.0
FAN07G2233 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.1e-19 102.8 521 25.3
A09p29500 Brassica napus HOM05D004490 ORTHO05D005353 1.4e-19 102.4 279 33.0
BraA09t38516Z Brassica rapa HOM05D004490 ORTHO05D005353 1.4e-19 102.4 279 33.0
HanXRQChr10g0290501 Helianthus annuus HOM05D004490 ORTHO05D005353 1.4e-19 102.4 300 32.0
THA.LOC104816311 Tarenaya hassleriana HOM05D004490 ORTHO05D005353 1.4e-19 102.4 455 27.7
Carub.0002s1095 Capsella rubella HOM05D004490 ORTHO05D005353 1.8e-19 102.1 443 31.4
ECA234G1973 Erigeron canadensis HOM05D004490 ORTHO05D005353 1.8e-19 102.1 437 27.7
arahy.Tifrunner.gnm1.ann1.2Y7GNB Arachis hypogaea HOM05D004490 ORTHO05D005353 2.4e-19 101.7 458 27.3
EL10Ac1g00082 Beta vulgaris HOM05D004490 ORTHO05D005353 2.4e-19 101.7 436 27.1
CSS0029963 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 2.4e-19 101.7 422 36.5
FAN11G3016 Fragaria x ananassa HOM05D004490 ORTHO05D005353 2.4e-19 101.7 296 35.8
Lj5g0002115 Lotus japonicus HOM05D004490 ORTHO05D005353 2.4e-19 101.7 438 27.9
QL02p033840 Quercus lobata HOM05D004490 ORTHO05D005353 2.4e-19 101.7 321 29.9
Phvul.007G089700 Phaseolus vulgaris HOM05D004490 ORTHO05D005353 3.1e-19 101.3 451 28.6
CARHR056930 Cardamine hirsuta HOM05D004490 ORTHO05D005353 4.1e-19 100.9 420 31.2
PSO017G7136 Papaver somniferum HOM05D004490 ORTHO05D005353 4.1e-19 100.9 440 27.7
PSO063G0599 Papaver somniferum HOM05D004490 ORTHO05D005353 4.1e-19 100.9 652 23.6
Ah.05g178090 Amaranthus hybridus HOM05D004490 ORTHO05D005353 5.3e-19 100.5 319 31.0
FAN21G1156 Fragaria x ananassa HOM05D004490 ORTHO05D005353 5.3e-19 100.5 232 36.2
Glyma.10G216200 Glycine max HOM05D004490 ORTHO05D005353 5.3e-19 100.5 450 28.0
Thecc.08G183200 Theobroma cacao HOM05D004490 ORTHO05D005353 5.3e-19 100.5 652 23.6
ATR1098G081 Amborella trichopoda HOM05D004490 ORTHO05D008312 9.1e-19 99.8 514 26.5
BcaC04g20957 Brassica carinata HOM05D004490 ORTHO05D005353 9.1e-19 99.8 279 33.0
BolC9t56586H Brassica oleracea HOM05D004490 ORTHO05D005353 9.1e-19 99.8 279 33.0
CDE08G1471 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 9.1e-19 99.8 420 27.4
Dinv41710 Davidia involucrata HOM05D004490 ORTHO05D005353 9.1e-19 99.8 431 27.8
Hma1.2p1_0363F.1_g136650 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 9.1e-19 99.8 296 32.4
Prupe.8G058000 Prunus persica HOM05D004490 ORTHO05D005353 9.1e-19 99.8 278 32.4
TWI63G0531 Tripterygium wilfordii HOM05D004490 ORTHO05D005353 9.1e-19 99.8 310 30.6
DCAR_014360 Daucus carota HOM05D004490 ORTHO05D005353 1.2e-18 99.4 458 29.7
FAN17G1649 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.2e-18 99.4 422 27.5
Gohir.A13G121400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.6e-18 99.0 654 23.1
Ca_10614_v3 Cicer arietinum L. HOM05D004490 ORTHO05D005353 2.0e-18 98.6 460 27.2
RcHm_v2.0_Chr5g0081671 Rosa chinensis HOM05D004490 ORTHO05D005353 2.0e-18 98.6 288 36.1
VMungo0720G0360 Vigna mungo HOM05D004490 ORTHO05D005353 2.0e-18 98.6 284 33.1
AL2G20400 Arabidopsis lyrata HOM05D004490 ORTHO05D005353 2.6e-18 98.2 425 32.0
TPR.G8816 Trifolium pratense HOM05D004490 ORTHO05D005353 3.5e-18 97.8 460 27.2
Hund27085 Selenicereus undatus HOM05D004490 ORTHO05D005353 4.5e-18 97.4 297 34.7
Sc23g0001210 Simmondsia chinensis HOM05D004490 ORTHO05D005353 4.5e-18 97.4 514 23.9
MELO3C024104.2 Cucumis melo HOM05D004490 ORTHO05D005353 5.9e-18 97.1 431 26.5
Thhalv10028527m.g Eutrema salsugineum HOM05D004490 ORTHO05D005353 5.9e-18 97.1 291 31.6
AT1G65280 Arabidopsis thaliana HOM05D004490 ORTHO05D005353 7.7e-18 96.7 452 31.9
EL10Ac1g00080 Beta vulgaris HOM05D004490 ORTHO05D005353 7.7e-18 96.7 649 23.0
Gorai.013G140400 Gossypium raimondii HOM05D004490 ORTHO05D005353 7.7e-18 96.7 521 24.4
Hma1.2p1_0363F.1_g136660 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 7.7e-18 96.7 438 28.1
BcaB01g01408 Brassica carinata HOM05D004490 ORTHO05D005353 1.0e-17 96.3 420 33.8
Psat6g187400 Pisum sativum HOM05D004490 ORTHO05D005353 1.3e-17 95.9 456 26.8
unitig_699.g19825 Utricularia gibba HOM05D004490 ORTHO05D005353 1.3e-17 95.9 319 32.0
GSVIVG01034483001 Vitis vinifera HOM05D004490 ORTHO05D005353 1.3e-17 95.9 682 23.9
ClCG09G010540 Citrullus lanatus HOM05D004490 ORTHO05D005353 1.7e-17 95.5 427 27.2
Gohir.D13G125400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.7e-17 95.5 507 24.3
Manes.02G191800 Manihot esculenta HOM05D004490 ORTHO05D005353 1.7e-17 95.5 452 26.3
SHI09004 Sapria himalayana HOM05D004490 ORTHO05D005353 1.7e-17 95.5 207 32.9
FvH4_3g44966 Fragaria vesca HOM05D004490 ORTHO05D005353 2.2e-17 95.1 269 32.3
Rhsim11G0059700 Rhododendron simsii HOM05D004490 ORTHO05D005353 2.2e-17 95.1 448 38.2
CiPaw.16G061300 Carya illinoinensis HOM05D004490 ORTHO05D005353 2.9e-17 94.7 670 23.6
Nn5g27710 Nelumbo nucifera HOM05D004490 ORTHO05D005353 3.8e-17 94.4 422 27.7
FvH4_3g44892 Fragaria vesca HOM05D004490 ORTHO05D005353 8.5e-17 93.2 429 28.7
CsaV3_7G024020 Cucumis sativus L. HOM05D004490 ORTHO05D005353 1.9e-16 92.0 434 27.2
Lsat_1_v5_gn_5_105541 Lactuca sativa HOM05D004490 ORTHO05D005353 1.9e-16 92.0 453 26.3
Medtr1g096410 Medicago truncatula HOM05D004490 ORTHO05D005353 1.9e-16 92.0 443 26.0
Glyma.20G175700 Glycine max HOM05D004490 ORTHO05D005353 5.5e-16 90.5 439 26.9
Aa31LG9G14890 Aethionema arabicum HOM05D004490 ORTHO05D005353 1.6e-15 89.0 350 28.6
AUR62004649 Chenopodium quinoa HOM05D004490 ORTHO05D005353 1.6e-15 89.0 298 30.2
Sabra19G0095100 Salix brachista HOM05D004490 ORTHO05D005353 1.6e-15 89.0 299 29.8
AagrBONN_evm.TU.Sc2ySwM_228.3521 Anthoceros agrestis HOM05D004490 ORTHO05D005353 1.8e-14 85.5 447 26.4
Eucgr.F04124 Eucalyptus grandis HOM05D004490 ORTHO05D005353 1.5e-13 82.4 463 26.8
Nitab4.5_0002074g0010 Nicotiana tabacum HOM05D004490 ORTHO05D005353 5.7e-13 80.5 224 31.7
Prupe.3G081100 Prunus persica HOM05D004490 ORTHO05D005353 4.8e-12 77.4 122 37.7
Haze_17934 Corylus avellana HOM05D004490 ORTHO05D005353 1.8e-11 75.5 457 26.3
Sed0010515 Sechium edule HOM05D004490 ORTHO05D005353 5.3e-11 73.9 256 29.7
FAN25G1655 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.5e-08 65.9 209 35.9
Gorai.012G182200 Gossypium raimondii HOM05D004490 ORTHO05D005353 5.5e-08 63.9 176 33.5
FAN11G3432 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.2e-07 62.8 128 35.9
FvH4_3g44932 Fragaria vesca HOM05D004490 ORTHO05D005353 4.7e-07 60.8 122 36.1
Cre07.g318900 Chlamydomonas reinhardtii HOM05D000175 ORTHO05D044203 2.3e-06 58.5 70 47.1
ECA240G4521 Erigeron canadensis HOM05D005094 ORTHO05D006271 2.3e-06 58.5 80 41.2
Nn2g14337 Nelumbo nucifera HOM05D005094 ORTHO05D006271 4.0e-06 57.8 87 39.1
Oeu039613.1 Olea europaea HOM05D004490 ORTHO05D005353 4.0e-06 57.8 56 48.2
RcHm_v2.0_Chr5g0082701 Rosa chinensis HOM05D004490 ORTHO05D005353 4.0e-06 57.8 310 26.5
SHI25260 Sapria himalayana HOM05D005094 ORTHO05D006271 4.0e-06 57.8 62 48.4
Zm00001eb011420 Zea mays HOM05D005094 ORTHO05D006271 4.0e-06 57.8 75 45.3
Lsat_1_v5_gn_3_114781 Lactuca sativa HOM05D005094 ORTHO05D006271 6.8e-06 57.0 87 37.9
Lsat_1_v5_gn_6_95721 Lactuca sativa HOM05D001406 ORTHO05D002467 6.8e-06 57.0 63 47.6
PSO339G5010 Papaver somniferum HOM05D005094 ORTHO05D006271 6.8e-06 57.0 80 37.5
PSO384G0916 Papaver somniferum HOM05D005094 ORTHO05D006271 6.8e-06 57.0 80 37.5
VMungo1215G3246 Vigna mungo HOM05D000160 ORTHO05D006841 6.8e-06 57.0 76 40.8
PGSC0003DMG400005935 Solanum tuberosum HOM05D005094 ORTHO05D006271 8.8e-06 56.6 93 36.6
GSVIVG01037590001 Vitis vinifera HOM05D005094 ORTHO05D006271 8.8e-06 56.6 82 41.5


User provided reference genes

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