Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 0.0e+00 2717.2 1956 100.0
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.6e-33 150.2 454 30.2
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 6.4e-22 111.7 537 26.6
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 3.2e-21 109.4 628 27.4
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 3.9e-19 102.4 166 42.2
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 5.1e-19 102.1 523 27.5
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.9e-18 100.1 592 26.0
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 4.3e-18 99.0 596 25.2
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 5.7e-18 98.6 582 23.9
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 1.3e-17 97.4 584 24.8
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 1.6e-17 97.1 584 26.0
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 2.8e-17 96.3 585 23.4
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 8.2e-17 94.7 581 22.7
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 8.2e-17 94.7 584 23.8
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 1.8e-16 93.6 513 26.9
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 3.1e-16 92.8 594 23.2
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 5.3e-16 92.0 585 24.3
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.2e-15 90.9 587 24.2
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.2e-15 90.9 587 24.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.2e-15 90.9 591 23.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.2e-15 90.9 591 23.9
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 1.5e-15 90.5 583 24.7
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 1.5e-15 90.5 587 24.0
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 2.0e-15 90.1 160 36.9
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 2.6e-15 89.7 555 24.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 2.6e-15 89.7 566 24.4
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 3.4e-15 89.4 582 23.7
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 4.5e-15 89.0 587 24.4
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 7.6e-15 88.2 587 23.9
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 1.0e-14 87.8 572 23.8
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.0e-14 87.8 580 24.7
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 1.0e-14 87.8 587 23.5
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 1.7e-14 87.0 577 24.4
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 1.7e-14 87.0 167 34.7
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 1.7e-14 87.0 167 35.3
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 3.8e-14 85.9 580 23.6
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 4.9e-14 85.5 578 23.9
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 6.5e-14 85.1 515 26.2
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 8.4e-14 84.7 579 23.3
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 8.4e-14 84.7 589 22.6
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 1.1e-13 84.3 167 36.5
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 1.1e-13 84.3 167 36.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 1.1e-13 84.3 167 36.5
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 1.1e-13 84.3 167 36.5
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 1.1e-13 84.3 167 36.5
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 1.4e-13 84.0 587 23.7
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 1.4e-13 84.0 519 25.0
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.9e-13 83.6 609 23.6
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 2.5e-13 83.2 585 22.9
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 3.2e-13 82.8 168 36.3
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 5.5e-13 82.0 172 34.9
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 7.1e-13 81.6 159 34.0
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 7.1e-13 81.6 572 23.4
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 9.3e-13 81.3 153 37.3
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 9.3e-13 81.3 601 23.5
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 9.3e-13 81.3 571 23.3
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.2e-12 80.9 159 34.6
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.1e-12 80.1 260 33.1
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 3.5e-12 79.3 585 22.7
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 3.5e-12 79.3 521 27.4
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 4.6e-12 79.0 572 24.7
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 4.6e-12 79.0 527 23.7
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 4.6e-12 79.0 162 34.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 6.1e-12 78.6 577 23.6
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 1.8e-11 77.0 568 23.9
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.8e-11 77.0 167 34.1
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 2.3e-11 76.6 622 22.3
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 3.0e-11 76.3 588 23.5
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.9e-11 75.9 268 32.1
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 6.7e-11 75.1 566 23.1
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.7e-11 75.1 448 25.9
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 8.7e-11 74.7 587 22.5
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.1e-10 74.3 642 23.5
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.5e-10 73.9 112 36.6
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 1.5e-10 73.9 587 23.2
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 1.5e-10 73.9 486 25.9
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 1.5e-10 73.9 589 23.8
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 1.9e-10 73.6 572 24.3
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.5e-10 73.2 144 37.5
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 2.5e-10 73.2 587 22.8
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 4.3e-10 72.4 541 22.0
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 4.3e-10 72.4 575 22.3
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 4.3e-10 72.4 142 38.0
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 5.7e-10 72.0 142 36.6
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 5.7e-10 72.0 582 21.8
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 1.3e-09 70.9 582 23.0
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 1.6e-09 70.5 608 23.5
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.6e-09 70.5 114 38.6
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 1.6e-09 70.5 579 23.1
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 1.6e-09 70.5 505 22.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 2.8e-09 69.7 572 21.9
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.7e-09 69.3 139 33.1
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 6.3e-09 68.6 617 22.7
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 6.3e-09 68.6 568 22.0
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.3e-09 68.6 125 37.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 8.2e-09 68.2 571 22.9
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.2e-09 68.2 514 26.8
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.1e-08 67.8 513 24.8
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 3.1e-08 66.2 574 21.8
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 4.1e-08 65.9 584 22.1
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 4.1e-08 65.9 511 26.0
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 5.3e-08 65.5 500 26.8
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.2e-07 64.3 519 24.9
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.2e-07 64.3 583 21.1
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 3.4e-07 62.8 582 22.9
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.0e-06 61.2 570 22.6


User provided reference genes

Program Settings