Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g038800 Chlamydomonas reinhardtii HOM05D000558 ORTHO05D003075 3.4e-161 571.6 295 100.0
Nitab4.5_0000001g0350 Nicotiana tabacum HOM05D000558 ORTHO05D003075 5.7e-23 112.5 232 33.2
Nitab4.5_0010699g0010 Nicotiana tabacum HOM05D000558 ORTHO05D003075 5.7e-23 112.5 240 31.7
Duzib106G1557 Durio zibethinus HOM05D000558 ORTHO05D003075 1.7e-22 110.9 237 29.1
arahy.Tifrunner.gnm1.ann1.QQ7287 Arachis hypogaea HOM05D000558 ORTHO05D003075 2.2e-22 110.5 242 29.3
Ciclev10021916m.g Citrus clementina HOM05D000558 ORTHO05D003075 2.8e-22 110.2 238 31.9
CAN.G415.6 Capsicum annuum HOM05D000558 ORTHO05D003075 3.7e-22 109.8 237 30.8
ECA248G2202 Erigeron canadensis HOM05D000558 ORTHO05D001857 3.7e-22 109.8 221 31.7
arahy.Tifrunner.gnm1.ann1.BS0ST2 Arachis hypogaea HOM05D000558 ORTHO05D003075 6.3e-22 109.0 242 28.9
Gohir.A13G166900 Gossypium hirsutum HOM05D000558 ORTHO05D003075 6.3e-22 109.0 237 30.4
Lj1A1140T42 Lonicera japonica HOM05D000558 ORTHO05D003075 1.8e-21 107.5 231 30.7
Lsat_1_v5_gn_6_38381 Lactuca sativa HOM05D000558 ORTHO05D003075 2.4e-21 107.1 236 29.7
Lsat_1_v5_gn_2_59281 Lactuca sativa HOM05D000558 ORTHO05D003075 4.1e-21 106.3 234 32.1
PGSC0003DMG400018823 Solanum tuberosum HOM05D000558 ORTHO05D003075 4.1e-21 106.3 233 32.2
Atru.chr2.1256 Acer truncatum HOM05D000558 ORTHO05D003075 5.3e-21 105.9 237 29.5
SEGI_03525 Sequoiadendron giganteum HOM05D000558 ORTHO05D003075 5.3e-21 105.9 237 30.0
Solyc12g019690.2 Solanum lycopersicum HOM05D000558 ORTHO05D003075 5.3e-21 105.9 236 31.4
Glyma.16G043800 Glycine max HOM05D000558 ORTHO05D003075 1.2e-20 104.8 237 31.2
Sopen12g009990 Solanum pennellii HOM05D000558 ORTHO05D003075 1.2e-20 104.8 236 30.9
HanXRQChr01g0024451 Helianthus annuus HOM05D000558 ORTHO05D003075 1.6e-20 104.4 231 29.4
Atru.chr5.346 Acer truncatum HOM05D000558 ORTHO05D003075 2.0e-20 104.0 237 29.1
PGR042G1586 Punica granatum HOM05D000558 ORTHO05D003075 2.0e-20 104.0 238 29.8
SalBow3G2963 Salvia bowleyana HOM05D000558 ORTHO05D003075 7.7e-20 102.1 232 30.2
PSO170G1677 Papaver somniferum HOM05D000558 ORTHO05D003075 1.0e-19 101.7 236 30.5
PSO357G0258 Papaver somniferum HOM05D000558 ORTHO05D003075 1.0e-19 101.7 236 30.5
Aa31LG5G14650 Aethionema arabicum HOM05D000558 ORTHO05D003075 1.7e-19 100.9 238 31.1
arahy.Tifrunner.gnm1.ann1.I0HFQI Arachis hypogaea HOM05D000558 ORTHO05D003075 1.7e-19 100.9 247 30.0
VMungo0464G1828 Vigna mungo HOM05D000558 ORTHO05D003075 1.7e-19 100.9 243 29.6
Lj2A356T43 Lonicera japonica HOM05D000558 ORTHO05D003075 2.9e-19 100.1 233 29.6
Lalb_Chr24g0403071 Lupinus albus HOM05D000558 ORTHO05D003075 2.9e-19 100.1 243 29.2
CiPaw.03G236300 Carya illinoinensis HOM05D000558 ORTHO05D003075 3.8e-19 99.8 242 29.8
Glyma.19G108400 Glycine max HOM05D000558 ORTHO05D003075 3.8e-19 99.8 248 31.5
HanXRQChr13g0397611 Helianthus annuus HOM05D000558 ORTHO05D003075 3.8e-19 99.8 226 30.1
Cc00_g09500 Coffea canephora HOM05D000558 ORTHO05D003075 5.0e-19 99.4 234 31.6
Peaxi162Scf00003g04830 Petunia axillaris HOM05D000558 ORTHO05D003075 6.5e-19 99.0 231 30.7
SMO239G0007 Selaginella moellendorffii HOM05D000558 ORTHO05D003075 6.5e-19 99.0 223 30.5
Cfa021586 Carpinus fangiana HOM05D000558 ORTHO05D001857 8.5e-19 98.6 246 30.5
Manes.09G144400 Manihot esculenta HOM05D000558 ORTHO05D003075 8.5e-19 98.6 233 28.8
Ah.11g044260 Amaranthus hybridus HOM05D000558 ORTHO05D003075 1.1e-18 98.2 237 31.2
unitig_0.g2408 Utricularia gibba HOM05D002780 ORTHO05D003254 1.1e-18 98.2 234 31.6
Lj2g0008883 Lotus japonicus HOM05D000558 ORTHO05D003075 1.5e-18 97.8 239 28.5
MBI18_g38872_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D003075 1.5e-18 97.8 231 30.3
Psat3g091120 Pisum sativum HOM05D000558 ORTHO05D003075 1.5e-18 97.8 239 30.1
RcHm_v2.0_Chr3g0497551 Rosa chinensis HOM05D000558 ORTHO05D003075 1.9e-18 97.4 237 30.8
ATR0796G064 Amborella trichopoda HOM05D000558 ORTHO05D003075 2.5e-18 97.1 239 31.4
Phvul.004G077700 Phaseolus vulgaris HOM05D000558 ORTHO05D003075 2.5e-18 97.1 229 31.0
Phvul.001G097000 Phaseolus vulgaris HOM05D000558 ORTHO05D003075 3.2e-18 96.7 234 28.2
CSS0000861 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D003075 4.2e-18 96.3 197 31.0
DCAR_019901 Daucus carota HOM05D000558 ORTHO05D003075 4.2e-18 96.3 232 31.0
CBR_g38878 Chara braunii HOM05D000558 ORTHO05D003075 5.5e-18 95.9 221 31.7
Glyma.02G069800 Glycine max HOM05D000558 ORTHO05D003075 7.2e-18 95.5 244 31.6
TWI36G0938 Tripterygium wilfordii HOM05D000558 ORTHO05D003075 9.4e-18 95.1 236 30.9
Dinv37004 Davidia involucrata HOM05D000558 ORTHO05D003075 1.2e-17 94.7 231 28.6
Duzib128G0160 Durio zibethinus HOM05D000558 ORTHO05D003075 2.1e-17 94.0 232 31.0
Lsat_1_v5_gn_1_59001 Lactuca sativa HOM05D000558 ORTHO05D003075 2.1e-17 94.0 238 30.7
Prupe.7G000900 Prunus persica HOM05D000558 ORTHO05D003075 2.1e-17 94.0 240 29.2
DCAR_009669 Daucus carota HOM05D000558 ORTHO05D003075 2.7e-17 93.6 232 28.9
Eucgr.A02066 Eucalyptus grandis HOM05D000558 ORTHO05D003075 2.7e-17 93.6 240 30.0
TAR362G1123 Trochodendron aralioides HOM05D000558 ORTHO05D003075 4.7e-17 92.8 233 30.9
Zm00001eb349840 Zea mays HOM05D000558 ORTHO05D003075 4.7e-17 92.8 234 29.9
CiPaw.03G159200 Carya illinoinensis HOM05D000558 ORTHO05D003075 6.1e-17 92.4 234 30.3
Rhsim04G0085200 Rhododendron simsii HOM05D000558 ORTHO05D003075 8.0e-17 92.0 278 25.9
Actinidia22100 Actinidia chinensis HOM05D000558 ORTHO05D003075 1.0e-16 91.7 232 29.3
Potri.002G227500 Populus trichocarpa HOM05D000558 ORTHO05D003075 1.4e-16 91.3 234 28.6
Duzib114G0172 Durio zibethinus HOM05D000558 ORTHO05D003075 1.8e-16 90.9 233 29.6
Glyma.16G151300 Glycine max HOM05D000558 ORTHO05D003075 1.8e-16 90.9 241 31.5
THA.LOC104819082 Tarenaya hassleriana HOM05D000558 ORTHO05D003075 1.8e-16 90.9 236 27.5
VMungo1383G0665 Vigna mungo HOM05D000558 ORTHO05D003075 2.3e-16 90.5 245 29.0
Lj1g0000038 Lotus japonicus HOM05D000558 ORTHO05D003075 4.0e-16 89.7 243 29.6
CDE04G1103 Ceratophyllum demersum HOM05D000558 ORTHO05D003075 6.8e-16 89.0 233 31.8
TPR.G5889 Trifolium pratense HOM05D000558 ORTHO05D003075 6.8e-16 89.0 243 28.0
Medtr7g085070 Medicago truncatula HOM05D000558 ORTHO05D003075 8.8e-16 88.6 239 27.6
Pp3c21_9770 Physcomitrium patens HOM05D000558 ORTHO05D003075 8.8e-16 88.6 256 27.7
arahy.Tifrunner.gnm1.ann1.K4UY0G Arachis hypogaea HOM05D000558 ORTHO05D003075 7.5e-15 85.5 278 27.3
Lj3g0015334 Lotus japonicus HOM05D000558 ORTHO05D003075 9.7e-15 85.1 221 29.9
Psat7g203280 Pisum sativum HOM05D000558 ORTHO05D003075 1.3e-14 84.7 189 33.3
Medtr6g033010 Medicago truncatula HOM05D000558 ORTHO05D003075 2.8e-14 83.6 245 25.7
Glyma.06G307000 Glycine max HOM05D000558 ORTHO05D003075 3.7e-14 83.2 234 30.8
Medtr4g049340 Medicago truncatula HOM05D000558 ORTHO05D003075 6.3e-14 82.4 189 32.3
Haze_19391 Corylus avellana HOM05D000558 ORTHO05D003075 8.3e-14 82.0 280 26.1
FAN09G4078 Fragaria x ananassa HOM05D000558 ORTHO05D003075 8.3e-14 82.0 232 26.3
RcHm_v2.0_Chr2g0159011 Rosa chinensis HOM05D000558 ORTHO05D003075 8.3e-14 82.0 232 27.2
FAN14G5874 Fragaria x ananassa HOM05D000558 ORTHO05D003075 1.1e-13 81.6 233 29.2
TPR.G7472 Trifolium pratense HOM05D000558 ORTHO05D003075 1.1e-13 81.6 179 33.5
Os01g0182200 Oryza sativa ssp. japonica HOM05D000558 ORTHO05D003075 1.4e-13 81.3 232 29.3
FvH4_6g43030 Fragaria vesca HOM05D000558 ORTHO05D003075 1.8e-13 80.9 233 29.2
FAN05G2650 Fragaria x ananassa HOM05D000558 ORTHO05D003075 2.4e-13 80.5 233 29.6
FvH4_6g43020 Fragaria vesca HOM05D000558 ORTHO05D003075 4.1e-13 79.7 232 25.4
Gohir.A07G219200 Gossypium hirsutum HOM05D000558 ORTHO05D003075 4.1e-13 79.7 235 30.2
FAN02G4255 Fragaria x ananassa HOM05D000558 ORTHO05D003075 7.0e-13 79.0 233 25.8
FAN09G1258 Fragaria x ananassa HOM05D000558 ORTHO05D003075 7.0e-13 79.0 233 29.2
FAN14G1295 Fragaria x ananassa HOM05D000558 ORTHO05D003075 7.0e-13 79.0 232 25.4
Dinv14602 Davidia involucrata HOM05D000558 ORTHO05D003075 9.1e-13 78.6 150 36.0
Glyma.12G097800 Glycine max HOM05D000558 ORTHO05D003075 1.2e-12 78.2 238 27.7
Gohir.D05G219500 Gossypium hirsutum HOM05D000558 ORTHO05D003075 1.2e-12 78.2 238 29.0
Psat1g096840 Pisum sativum HOM05D000558 ORTHO05D003075 1.2e-12 78.2 247 26.7
CANSAT64G2334 Cannabis sativa HOM05D000558 ORTHO05D003075 2.0e-12 77.4 220 28.2
Atru.chr12.1344 Acer truncatum HOM05D000558 ORTHO05D003075 3.5e-12 76.6 222 27.0
Gorai.009G226500 Gossypium raimondii HOM05D000558 ORTHO05D003075 3.5e-12 76.6 238 29.0
Ca_04502_v3 Cicer arietinum L. HOM05D000558 ORTHO05D003075 7.7e-12 75.5 165 31.5
DCAR_019902 Daucus carota HOM05D004211 ORTHO05D005559 1.0e-11 75.1 281 23.1
Gohir.A10G184600 Gossypium hirsutum HOM05D000558 ORTHO05D003075 2.2e-11 73.9 242 27.3
ECA233G6200 Erigeron canadensis HOM05D000558 ORTHO05D001857 3.8e-11 73.2 199 29.1
Cpa.g.c33833 Carica papaya HOM05D000558 ORTHO05D003075 5.0e-11 72.8 235 27.7
GSVIVG01033371001 Vitis vinifera HOM05D000558 ORTHO05D003075 8.5e-11 72.0 149 31.5
Gorai.011G214600 Gossypium raimondii HOM05D000558 ORTHO05D003075 1.1e-10 71.6 242 27.3
Gorai.012G017700 Gossypium raimondii HOM05D000558 ORTHO05D003075 1.5e-10 71.2 235 28.9
Gohir.D04G015200 Gossypium hirsutum HOM05D000558 ORTHO05D003075 1.9e-10 70.9 235 28.5
CDE02G1115 Ceratophyllum demersum HOM05D000558 ORTHO05D006060 2.5e-10 70.5 239 26.8
HPP92_006507 Vanilla planifolia HOM05D000558 ORTHO05D006060 2.5e-10 70.5 219 28.8
DCAR_013699 Daucus carota HOM05D000558 ORTHO05D001857 3.2e-10 70.1 181 31.5
Gohir.D10G191800 Gossypium hirsutum HOM05D000558 ORTHO05D003075 4.7e-09 66.2 242 25.6
FAN26G0275 Fragaria x ananassa HOM05D000558 ORTHO05D003075 1.8e-08 64.3 143 32.9
Psat3g082760 Pisum sativum HOM05D000558 ORTHO05D006060 3.0e-08 63.5 236 26.7
FAN02G0810 Fragaria x ananassa HOM05D000558 ORTHO05D003075 5.2e-08 62.8 199 26.1
THA.LOC104814769 Tarenaya hassleriana HOM05D000558 ORTHO05D006060 6.8e-08 62.4 219 26.5
TAR629G1433 Trochodendron aralioides HOM05D000558 ORTHO05D003075 6.8e-08 62.4 179 32.4
Potri.006G027200 Populus trichocarpa HOM05D000558 ORTHO05D006060 1.2e-07 61.6 228 28.9
Zm00001eb015230 Zea mays HOM05D000558 ORTHO05D006060 1.2e-07 61.6 236 23.7
TAR629G2709 Trochodendron aralioides HOM05D000558 ORTHO05D003075 2.6e-07 60.5 152 31.6
Ah.13g077410 Amaranthus hybridus HOM05D000558 ORTHO05D006060 3.4e-07 60.1 219 28.8
RcHm_v2.0_Chr2g0159031 Rosa chinensis HOM05D000558 ORTHO05D003075 4.4e-07 59.7 147 26.5
CiPaw.04G114900 Carya illinoinensis HOM05D000558 ORTHO05D003075 9.8e-07 58.5 229 22.3
FAN05G3738 Fragaria x ananassa HOM05D000558 ORTHO05D003075 9.8e-07 58.5 89 33.7
Ciclev10012628m.g Citrus clementina HOM05D000558 ORTHO05D006060 1.7e-06 57.8 240 26.7
Manes.09G074219 Manihot esculenta HOM05D000558 ORTHO05D006060 1.7e-06 57.8 240 26.7
Hund24508 Selenicereus undatus HOM05D000558 ORTHO05D006060 1.7e-06 57.8 228 25.9
PGR042G3619 Punica granatum HOM05D000558 ORTHO05D006060 2.2e-06 57.4 236 25.8
COL.COLO4_05088 Corchorus olitorius HOM05D000558 ORTHO05D003075 2.8e-06 57.0 191 28.3
Sed0009539 Sechium edule HOM05D000558 ORTHO05D006060 3.7e-06 56.6 191 27.2
TPR.G20690 Trifolium pratense HOM05D000558 ORTHO05D006060 3.7e-06 56.6 235 27.2
ClCG10G016560 Citrullus lanatus HOM05D000558 ORTHO05D006060 4.8e-06 56.2 207 26.1
Glyma.03G119300 Glycine max HOM05D000558 ORTHO05D006060 6.3e-06 55.8 234 25.6
Lsat_1_v5_gn_1_75941 Lactuca sativa HOM05D000376 ORTHO05D000237 8.3e-06 55.5 225 26.2


User provided reference genes

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