Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g037650 Chlamydomonas reinhardtii HOM05D006853 ORTHO05D008906 1.5e-142 509.6 283 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 5.3e-18 95.9 192 35.4
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 5.3e-18 95.9 185 33.5
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 6.9e-18 95.5 168 37.5
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 7.9e-14 82.0 168 33.3
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 1.4e-13 81.3 169 33.7
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 1.8e-13 80.9 181 34.3
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 3.0e-13 80.1 169 32.5
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 3.9e-13 79.7 218 31.7
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 5.1e-13 79.3 174 33.9
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 5.1e-13 79.3 170 33.5
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 6.7e-13 79.0 226 31.9
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 8.8e-13 78.6 169 32.0
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 8.8e-13 78.6 214 30.8
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 8.8e-13 78.6 214 30.8
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 8.8e-13 78.6 216 30.6
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 8.8e-13 78.6 216 30.6
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 8.8e-13 78.6 169 33.7
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 8.8e-13 78.6 174 33.9
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 1.5e-12 77.8 218 32.1
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 2.0e-12 77.4 219 32.9
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 2.0e-12 77.4 240 28.8
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 2.0e-12 77.4 264 27.7
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 2.0e-12 77.4 232 32.8
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 2.5e-12 77.0 169 31.4
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 2.5e-12 77.0 175 33.7
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 3.3e-12 76.6 234 31.2
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 4.3e-12 76.3 168 33.3
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 4.3e-12 76.3 169 32.5
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 4.3e-12 76.3 190 33.7
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 5.7e-12 75.9 169 33.1
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 5.7e-12 75.9 169 33.1
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 7.4e-12 75.5 219 30.6
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 7.4e-12 75.5 190 32.6
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 9.7e-12 75.1 175 32.6
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 1.3e-11 74.7 153 32.7
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 1.3e-11 74.7 160 32.5
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 1.3e-11 74.7 219 31.5
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 1.3e-11 74.7 219 30.6
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 1.7e-11 74.3 218 29.8
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 1.7e-11 74.3 220 30.5
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 2.2e-11 73.9 175 33.1
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 2.8e-11 73.6 220 30.0
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 2.8e-11 73.6 174 32.8
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 2.8e-11 73.6 179 33.5
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 2.8e-11 73.6 219 32.4
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 3.7e-11 73.2 181 32.6
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 4.8e-11 72.8 190 33.2
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 6.3e-11 72.4 234 32.1
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 8.2e-11 72.0 184 32.1
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 8.2e-11 72.0 219 30.6
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 1.1e-10 71.6 191 33.0
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 1.1e-10 71.6 217 31.3
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 1.4e-10 71.2 169 32.0
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 1.4e-10 71.2 175 32.0
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 1.4e-10 71.2 176 31.2
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 1.8e-10 70.9 159 33.3
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 2.4e-10 70.5 160 31.2
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 3.1e-10 70.1 233 28.3
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 3.1e-10 70.1 189 29.6
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 3.1e-10 70.1 174 31.6
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 4.1e-10 69.7 181 31.5
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 5.3e-10 69.3 169 30.8
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 5.3e-10 69.3 180 31.7
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 6.9e-10 68.9 189 29.6
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 6.9e-10 68.9 171 33.9
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 1.2e-09 68.2 175 31.4
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 1.2e-09 68.2 223 29.1
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 1.5e-09 67.8 179 30.2
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 2.0e-09 67.4 219 29.7
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 2.6e-09 67.0 165 32.1
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 2.6e-09 67.0 172 31.4
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 3.4e-09 66.6 171 29.8
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 4.5e-09 66.2 159 35.8
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 5.9e-09 65.9 180 28.9
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 5.9e-09 65.9 181 29.8
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 5.9e-09 65.9 181 30.4
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 5.9e-09 65.9 184 31.0
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 2.2e-08 63.9 177 31.1
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 2.9e-08 63.5 194 28.9
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 3.8e-08 63.2 168 32.7
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 6.5e-08 62.4 187 29.9
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 1.1e-07 61.6 221 28.1
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 1.9e-07 60.8 169 29.0
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 1.9e-07 60.8 169 29.0
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 1.9e-07 60.8 181 28.7
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 2.5e-07 60.5 221 27.1
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 2.5e-07 60.5 221 27.1
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 5.5e-07 59.3 177 32.2
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 1.6e-06 57.8 177 31.6


User provided reference genes

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