Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 0.0e+00 2578.5 2059 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 2.5e-85 322.4 696 33.5
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 1.1e-83 317.0 699 35.9
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 1.1e-80 307.0 700 32.4
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 4.6e-79 301.6 713 33.0
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 1.8e-78 299.7 701 30.7
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 4.3e-77 295.0 697 30.7
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 4.3e-77 295.0 697 30.7
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 5.7e-77 294.7 700 31.0
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 7.4e-77 294.3 696 30.9
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 7.4e-77 294.3 700 30.9
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 7.4e-77 294.3 697 32.0
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 1.1e-75 290.4 701 30.2
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 1.1e-75 290.4 703 31.0
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 1.4e-75 290.0 703 31.2
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 4.1e-75 288.5 700 31.3
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 4.1e-75 288.5 702 30.5
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 4.1e-75 288.5 699 31.3
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 6.9e-75 287.7 700 32.1
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 9.0e-75 287.3 702 31.1
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 9.0e-75 287.3 702 33.0
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 1.2e-74 287.0 705 31.1
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.2e-74 287.0 701 31.4
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.5e-74 286.6 705 30.9
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 2.0e-74 286.2 703 31.0
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 2.0e-74 286.2 700 31.0
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 2.0e-74 286.2 700 31.3
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 2.0e-74 286.2 705 31.1
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 2.0e-74 286.2 234 60.7
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 2.6e-74 285.8 704 31.8
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 2.6e-74 285.8 705 30.2
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 2.6e-74 285.8 700 32.0
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 2.6e-74 285.8 693 31.9
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 3.4e-74 285.4 700 30.9
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 3.4e-74 285.4 234 61.1
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 4.5e-74 285.0 703 31.0
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 4.5e-74 285.0 705 30.9
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 5.9e-74 284.6 697 32.1
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 5.9e-74 284.6 703 31.7
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 7.6e-74 284.3 707 30.7
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.0e-73 283.9 700 32.6
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 2.2e-73 282.7 697 30.4
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 2.2e-73 282.7 695 31.9
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 2.2e-73 282.7 234 58.1
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 2.9e-73 282.3 691 31.7
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 3.8e-73 282.0 697 30.1
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 5.0e-73 281.6 700 31.9
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 5.0e-73 281.6 706 31.0
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 8.5e-73 280.8 699 31.3
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.1e-72 280.4 696 30.6
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.1e-72 280.4 237 57.4
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 1.4e-72 280.0 234 58.1
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.9e-72 279.6 700 29.9
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 1.9e-72 279.6 703 30.9
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 1.9e-72 279.6 691 30.5
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 2.5e-72 279.3 252 55.2
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 2.5e-72 279.3 702 29.8
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.5e-72 279.3 701 31.1
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 2.5e-72 279.3 270 54.4
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 3.2e-72 278.9 707 30.7
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 3.2e-72 278.9 692 29.9
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 3.2e-72 278.9 709 30.0
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 4.2e-72 278.5 704 30.8
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 4.2e-72 278.5 252 55.2
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 5.5e-72 278.1 228 60.1
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 9.3e-72 277.3 688 31.5
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 9.3e-72 277.3 700 31.1
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.2e-71 276.9 234 57.3
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 1.6e-71 276.6 705 30.6
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 1.6e-71 276.6 228 59.6
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 2.7e-71 275.8 695 30.4
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 2.7e-71 275.8 693 30.9
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 4.6e-71 275.0 234 60.3
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 6.1e-71 274.6 259 55.2
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 2.3e-70 272.7 234 57.7
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 3.0e-70 272.3 699 30.5
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 6.7e-70 271.2 234 56.4
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.5e-69 270.0 703 30.0
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 5.7e-69 268.1 701 30.2
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 1.6e-68 266.5 695 31.5
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 2.4e-67 262.7 699 30.0
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 5.3e-67 261.5 703 30.3
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.2e-66 260.4 715 29.9
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 5.0e-65 255.0 228 57.5
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 2.3e-62 246.1 704 29.8
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 1.1e-61 243.8 729 29.4
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.2e-60 239.6 714 29.6
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 4.8e-60 238.4 735 28.3
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.3e-60 238.0 733 28.2
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 8.2e-60 237.7 691 28.8
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 2.4e-59 236.1 697 28.8
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.5e-58 233.4 735 28.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.2e-57 229.6 732 28.3
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 5.0e-57 228.4 252 48.8
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 2.7e-55 222.6 173 60.1
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 1.4e-54 220.3 759 26.6
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 1.5e-53 216.9 693 29.0
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 2.6e-53 216.1 318 42.1
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 4.4e-53 215.3 701 28.7
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 4.8e-52 211.8 645 28.4
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 3.1e-51 209.1 641 28.9
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-51 208.8 689 27.6
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 9.1e-51 207.6 640 29.1
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 2.6e-50 206.1 629 30.0
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 5.9e-50 204.9 632 29.1
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 7.7e-50 204.5 735 26.3
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 3.2e-48 199.1 639 27.7
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 1.6e-47 196.8 700 25.1
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 2.1e-47 196.4 175 60.0
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 3.6e-47 195.7 700 26.7
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.8e-43 183.3 702 25.6
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 3.5e-42 179.1 167 55.7
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 3.8e-41 175.6 612 27.3
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.2e-36 159.8 233 42.1
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 6.3e-36 158.3 184 49.5
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.4e-35 157.1 234 42.3
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.9e-32 146.7 632 26.4
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 2.5e-32 146.4 104 68.3
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 7.0e-27 128.3 704 23.2
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.7e-26 126.3 233 35.6
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 1.7e-25 123.6 147 46.3
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 4.6e-18 99.0 191 33.5
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 3.9e-17 95.9 191 31.9
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 1.1e-16 94.4 85 54.1
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.6e-15 90.5 83 54.2
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 6.2e-15 88.6 60 61.7
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 8.0e-15 88.2 192 30.2
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 1.4e-14 87.4 60 60.0
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 5.2e-14 85.5 57 61.4
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.5e-13 81.6 87 46.0
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 1.7e-12 80.5 86 48.8
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 8.1e-07 61.6 49 53.1
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 8.9e-06 58.2 127 33.9
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 8.9e-06 58.2 127 33.9


User provided reference genes

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