Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 3.5e-49 198.0 99 100.0
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.6e-17 92.8 97 55.7
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 7.8e-17 90.5 103 49.5
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.3e-16 89.7 103 48.5
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.7e-16 89.4 100 47.0
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 2.3e-16 89.0 103 48.5
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 3.0e-16 88.6 103 48.5
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 3.0e-16 88.6 103 47.6
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.0e-16 88.6 103 48.5
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.9e-16 88.2 103 48.5
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 5.0e-16 87.8 102 45.1
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 6.6e-16 87.4 100 48.0
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.1e-15 86.7 103 46.6
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.5e-15 86.3 103 46.6
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.5e-15 86.3 103 47.6
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.9e-15 85.9 105 46.7
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.5e-15 85.5 103 44.7
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.5e-15 85.5 103 46.6
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 2.5e-15 85.5 103 47.6
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.5e-15 85.5 103 45.6
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 3.3e-15 85.1 103 44.7
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.3e-15 84.7 103 46.6
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.3e-15 84.7 103 46.6
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.3e-15 84.7 103 44.7
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 4.3e-15 84.7 103 44.7
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 5.6e-15 84.3 101 46.5
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 7.3e-15 84.0 103 46.6
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 7.3e-15 84.0 103 45.6
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 7.3e-15 84.0 100 48.0
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 7.3e-15 84.0 103 45.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 9.5e-15 83.6 103 46.6
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 9.5e-15 83.6 103 44.7
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 9.5e-15 83.6 103 46.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 9.5e-15 83.6 106 48.1
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 9.5e-15 83.6 103 45.6
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 9.5e-15 83.6 103 46.6
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.2e-14 83.2 103 46.6
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.2e-14 83.2 103 45.6
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.2e-14 83.2 103 44.7
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.6e-14 82.8 103 46.6
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.6e-14 82.8 103 46.6
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.6e-14 82.8 103 44.7
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-14 82.4 103 44.7
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.1e-14 82.4 101 46.5
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.1e-14 82.4 103 46.6
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 2.8e-14 82.0 98 46.9
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 2.8e-14 82.0 103 44.7
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.8e-14 82.0 100 47.0
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.8e-14 82.0 100 47.0
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 3.6e-14 81.6 103 44.7
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 3.6e-14 81.6 100 47.0
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 3.6e-14 81.6 103 43.7
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 3.6e-14 81.6 103 46.6
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.6e-14 81.6 103 43.7
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 3.6e-14 81.6 101 45.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 3.6e-14 81.6 103 44.7
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 3.6e-14 81.6 103 44.7
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.7e-14 81.3 103 46.6
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 4.7e-14 81.3 103 43.7
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 6.2e-14 80.9 103 45.6
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 6.2e-14 80.9 103 45.6
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 6.2e-14 80.9 102 47.1
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 8.1e-14 80.5 103 45.6
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 8.1e-14 80.5 103 44.7
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 8.1e-14 80.5 98 45.9
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 8.1e-14 80.5 103 45.6
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 8.1e-14 80.5 103 44.7
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-13 80.1 103 44.7
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-13 80.1 103 44.7
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-13 80.1 103 44.7
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-13 80.1 103 44.7
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.1e-13 80.1 102 45.1
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.1e-13 80.1 103 44.7
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.1e-13 80.1 101 45.5
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-13 79.7 103 44.7
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-13 79.7 103 44.7
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.4e-13 79.7 103 44.7
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 1.4e-13 79.7 103 43.7
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.4e-13 79.7 103 43.7
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.8e-13 79.3 103 43.7
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.8e-13 79.3 103 43.7
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.8e-13 79.3 102 45.1
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 2.3e-13 79.0 102 45.1
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.3e-13 79.0 103 43.7
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.3e-13 79.0 103 44.7
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.3e-13 79.0 103 43.7
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 3.1e-13 78.6 103 44.7
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 3.1e-13 78.6 102 44.1
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 3.1e-13 78.6 102 44.1
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 3.1e-13 78.6 102 44.1
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 3.1e-13 78.6 102 44.1
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 3.1e-13 78.6 102 44.1
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 3.1e-13 78.6 102 44.1
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 3.1e-13 78.6 103 44.7
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 3.1e-13 78.6 100 44.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 3.1e-13 78.6 103 44.7
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 4.0e-13 78.2 103 43.7
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 4.0e-13 78.2 102 44.1
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 4.0e-13 78.2 103 45.6
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.0e-13 78.2 103 45.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 5.2e-13 77.8 102 43.1
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 5.2e-13 77.8 102 45.1
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.2e-13 77.8 101 42.6
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 6.8e-13 77.4 100 43.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.8e-13 77.4 100 43.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.8e-13 77.4 100 43.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.8e-13 77.4 100 43.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 6.8e-13 77.4 103 42.7
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 8.9e-13 77.0 103 43.7
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 8.9e-13 77.0 102 43.1
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 8.9e-13 77.0 102 44.1
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.2e-12 76.6 103 43.7
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.5e-12 76.3 106 43.4
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.6e-12 75.5 98 42.9
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 3.4e-12 75.1 102 43.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 5.8e-12 74.3 117 41.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 7.5e-12 73.9 64 59.4
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 9.9e-12 73.6 109 41.3
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.3e-11 73.2 100 43.0
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 2.2e-11 72.4 103 40.8
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 4.1e-10 68.2 96 40.6
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.2e-09 66.6 88 44.3
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 3.5e-09 65.1 98 38.8
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.5e-09 65.1 71 49.3
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 4.6e-09 64.7 70 51.4
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 7.8e-09 63.9 69 52.2
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 3.0e-08 62.0 88 40.9
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.9e-08 61.6 68 50.0
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.1e-07 60.1 68 50.0
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.9e-07 59.3 88 39.8
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 5.6e-07 57.8 114 35.1
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 9.5e-07 57.0 79 40.5
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 1.6e-06 56.2 82 39.0
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.6e-06 55.1 85 37.6


User provided reference genes

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