Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 7.0e-93 344.0 177 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 1.3e-33 147.1 174 42.5
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 2.4e-32 142.9 169 43.2
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 6.9e-32 141.4 169 42.0
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 6.9e-32 141.4 170 44.1
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 1.2e-31 140.6 178 42.7
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 4.5e-31 138.7 165 43.6
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 4.5e-31 138.7 171 43.3
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 9.9e-31 137.5 165 43.6
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 1.3e-30 137.1 170 41.2
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 2.2e-30 136.3 165 41.8
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 2.2e-30 136.3 165 43.0
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 2.9e-30 136.0 165 44.8
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 8.4e-30 134.4 165 46.1
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 8.4e-30 134.4 165 42.4
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 2.4e-29 132.9 170 41.8
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 3.2e-29 132.5 165 42.4
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 4.2e-29 132.1 163 41.1
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 4.2e-29 132.1 174 40.8
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 4.2e-29 132.1 175 40.6
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 4.2e-29 132.1 165 41.8
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 5.4e-29 131.7 170 41.2
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 5.4e-29 131.7 170 41.2
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 7.1e-29 131.3 176 40.3
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 9.3e-29 131.0 165 41.8
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 1.2e-28 130.6 163 41.7
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 1.2e-28 130.6 171 40.4
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 1.2e-28 130.6 165 41.2
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.6e-28 130.2 165 40.6
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.6e-28 130.2 165 40.6
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 1.6e-28 130.2 173 41.6
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 2.1e-28 129.8 165 40.6
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 2.1e-28 129.8 170 41.2
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 3.5e-28 129.0 165 41.8
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 3.5e-28 129.0 165 41.2
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 4.6e-28 128.6 165 41.2
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 6.0e-28 128.3 170 40.0
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 6.0e-28 128.3 165 41.2
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 6.0e-28 128.3 163 41.1
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 6.0e-28 128.3 166 40.4
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 1.0e-27 127.5 165 42.4
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 1.0e-27 127.5 171 39.2
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 1.0e-27 127.5 171 39.2
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 1.3e-27 127.1 170 40.0
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 1.3e-27 127.1 171 39.2
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 1.3e-27 127.1 167 41.3
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.3e-27 127.1 167 41.3
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 1.3e-27 127.1 165 41.8
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 1.3e-27 127.1 165 40.6
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 1.8e-27 126.7 165 40.0
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 1.8e-27 126.7 165 40.0
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 2.3e-27 126.3 165 38.8
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 2.3e-27 126.3 163 41.1
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 2.3e-27 126.3 165 38.8
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 2.3e-27 126.3 165 41.2
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 2.3e-27 126.3 163 40.5
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 3.0e-27 125.9 163 41.1
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 3.9e-27 125.6 170 39.4
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 3.9e-27 125.6 170 38.8
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 6.7e-27 124.8 165 39.4
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 8.7e-27 124.4 163 40.5
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 8.7e-27 124.4 167 39.5
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 8.7e-27 124.4 165 39.4
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 8.7e-27 124.4 170 40.6
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 1.1e-26 124.0 162 39.5
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 1.5e-26 123.6 165 39.4
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.5e-26 123.6 165 40.0
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.9e-26 123.2 186 36.6
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 1.9e-26 123.2 160 42.5
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 2.5e-26 122.9 165 40.6
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 2.5e-26 122.9 165 39.4
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 3.3e-26 122.5 165 40.6
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 3.3e-26 122.5 171 39.8
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 4.3e-26 122.1 163 39.3
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 9.6e-26 120.9 163 41.1
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 1.3e-25 120.6 164 38.4
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.8e-25 119.4 173 37.6
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 3.7e-25 119.0 150 40.0
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 3.7e-25 119.0 165 38.8
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 6.2e-25 118.2 174 37.4
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 1.1e-24 117.5 137 40.9
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 5.3e-24 115.2 137 41.6
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 6.9e-24 114.8 164 38.4
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 1.2e-23 114.0 149 38.9
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 4.5e-23 112.1 137 39.4
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 4.5e-23 112.1 137 40.1
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 1.0e-22 110.9 150 39.3
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 1.3e-22 110.5 125 43.2
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 2.2e-22 109.8 192 37.0
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 4.9e-22 108.6 151 41.1
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 1.9e-21 106.7 137 40.9
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 5.5e-21 105.1 136 40.4
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 5.5e-21 105.1 137 37.2
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 9.3e-21 104.4 145 39.3
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 2.7e-20 102.8 125 42.4
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 1.0e-19 100.9 174 36.2
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.5e-18 96.3 165 33.3
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 8.2e-17 91.3 116 41.4
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 1.2e-15 87.4 112 37.5
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 2.6e-15 86.3 109 39.4
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 7.6e-15 84.7 106 41.5
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 3.2e-13 79.3 138 31.9
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 6.1e-12 75.1 162 29.6
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 1.0e-11 74.3 91 36.3
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 1.0e-11 74.3 98 37.8
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 1.8e-11 73.6 88 44.3
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 3.0e-11 72.8 91 37.4
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 3.9e-11 72.4 165 30.3
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 5.1e-11 72.0 130 34.6
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.1e-10 70.9 132 33.3
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 7.4e-10 68.2 106 37.7
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 1.4e-08 63.9 90 37.8
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 1.4e-08 63.9 96 35.4
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 9.0e-08 61.2 77 40.3
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 2.6e-07 59.7 86 33.7


User provided reference genes

Program Settings