Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g025250 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D044326 1.3e-221 772.7 391 100.0
MCO04G005 Micromonas commoda HOM05D001660 ORTHO05D044326 7.5e-39 165.6 341 32.0
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 1.7e-35 154.5 338 31.7
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 3.9e-35 153.3 315 33.0
PRCOL_00004799 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 4.7e-25 119.8 145 46.9
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 1.4e-21 108.2 141 39.0
TWI38G0734 Tripterygium wilfordii HOM05D001660 ORTHO05D003277 3.2e-21 107.1 141 41.1
Cre06.g311600 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D003277 4.1e-21 106.7 145 40.7
Nitab4.5_0000190g0120 Nicotiana tabacum HOM05D001660 ORTHO05D003277 4.1e-21 106.7 142 39.4
SMO174G0108 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 4.1e-21 106.7 145 37.2
Migut.I00194 Erythranthe guttata HOM05D001660 ORTHO05D003277 7.1e-21 105.9 141 37.6
MSTRG.8638 Avicennia marina HOM05D001660 ORTHO05D003277 9.2e-21 105.5 142 38.0
Glyma.07G190300 Glycine max HOM05D001660 ORTHO05D003277 9.2e-21 105.5 141 39.0
Lsat_1_v5_gn_7_19661 Lactuca sativa HOM05D001660 ORTHO05D003277 9.2e-21 105.5 141 40.4
Manes.16G020800 Manihot esculenta HOM05D001660 ORTHO05D003277 1.2e-20 105.1 141 38.3
PRCOL_00005738 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 1.2e-20 105.1 132 43.2
BraA01t01222Z Brassica rapa HOM05D001660 ORTHO05D003277 1.6e-20 104.8 141 39.0
Nitab4.5_0003574g0040 Nicotiana tabacum HOM05D001660 ORTHO05D003277 1.6e-20 104.8 142 39.4
AagrBONN_evm.TU.Sc2ySwM_117.1987 Anthoceros agrestis HOM05D001660 ORTHO05D003277 2.1e-20 104.4 139 41.0
Thhalv10025469m.g Eutrema salsugineum HOM05D001660 ORTHO05D003277 2.1e-20 104.4 141 39.0
GSVIVG01003195001 Vitis vinifera HOM05D001660 ORTHO05D003277 2.1e-20 104.4 141 36.9
GSVIVG01003197001 Vitis vinifera HOM05D001660 ORTHO05D003277 2.1e-20 104.4 141 36.9
Ah.09g236120 Amaranthus hybridus HOM05D001660 ORTHO05D003277 2.7e-20 104.0 141 39.7
Medtr4g091060 Medicago truncatula HOM05D001660 ORTHO05D003277 2.7e-20 104.0 141 36.9
Potri.002G077200 Populus trichocarpa HOM05D001660 ORTHO05D003277 2.7e-20 104.0 141 38.3
Sabra05G0138900 Salix brachista HOM05D001660 ORTHO05D003277 2.7e-20 104.0 136 39.0
PGSC0003DMG400022409 Solanum tuberosum HOM05D001660 ORTHO05D003277 2.7e-20 104.0 142 38.7
Thecc.06G198900 Theobroma cacao HOM05D001660 ORTHO05D003277 2.7e-20 104.0 141 36.9
AagrBONN_evm.TU.Sc2ySwM_117.1412 Anthoceros agrestis HOM05D001660 ORTHO05D003277 3.5e-20 103.6 139 41.0
A01p12790 Brassica napus HOM05D001660 ORTHO05D003277 3.5e-20 103.6 141 39.0
AUR62014720 Chenopodium quinoa HOM05D001660 ORTHO05D003277 3.5e-20 103.6 141 38.3
Nitab4.5_0003834g0030 Nicotiana tabacum HOM05D001660 ORTHO05D003277 3.5e-20 103.6 142 39.4
Peaxi162Scf00355g00915 Petunia axillaris HOM05D001660 ORTHO05D003277 3.5e-20 103.6 142 38.7
Sabra02G0060700 Salix brachista HOM05D001660 ORTHO05D003277 3.5e-20 103.6 141 37.6
SGA_v2.0_scaffold114G31978 Striga asiatica HOM05D001660 ORTHO05D003277 3.5e-20 103.6 141 38.3
EL10Ac8g20526 Beta vulgaris HOM05D001660 ORTHO05D003277 4.6e-20 103.2 141 38.3
Cpa.g.sc27.119 Carica papaya HOM05D001660 ORTHO05D003277 4.6e-20 103.2 141 38.3
CsaV3_1G011810 Cucumis sativus L. HOM05D001660 ORTHO05D003277 4.6e-20 103.2 141 38.3
PGR042G2885 Punica granatum HOM05D001660 ORTHO05D003277 4.6e-20 103.2 141 39.0
Solyc02g079100.3 Solanum lycopersicum HOM05D001660 ORTHO05D003277 4.6e-20 103.2 142 38.7
AUR62019436 Chenopodium quinoa HOM05D001660 ORTHO05D003277 6.0e-20 102.8 141 38.3
FAN11G0361 Fragaria x ananassa HOM05D001660 ORTHO05D003277 6.0e-20 102.8 141 38.3
FAN25G0401 Fragaria x ananassa HOM05D001660 ORTHO05D003277 6.0e-20 102.8 141 38.3
Phvul.002G222300 Phaseolus vulgaris HOM05D001660 ORTHO05D003277 6.0e-20 102.8 141 39.7
PGR004G2075 Punica granatum HOM05D001660 ORTHO05D003277 6.0e-20 102.8 141 38.3
RcHm_v2.0_Chr5g0006511 Rosa chinensis HOM05D001660 ORTHO05D003277 6.0e-20 102.8 141 37.6
unitig_749.g14095 Utricularia gibba HOM05D001660 ORTHO05D003277 6.0e-20 102.8 142 38.0
CSS0023132 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 7.8e-20 102.4 141 38.3
DCAR_004137 Daucus carota HOM05D001660 ORTHO05D003277 7.8e-20 102.4 141 37.6
MD10G1046000 Malus domestica HOM05D001660 ORTHO05D003277 7.8e-20 102.4 141 38.3
Mapoly0005s0066 Marchantia polymorpha HOM05D001660 ORTHO05D003277 7.8e-20 102.4 139 39.6
Pp3c14_9170 Physcomitrium patens HOM05D001660 ORTHO05D003277 7.8e-20 102.4 139 40.3
VMungo0251G1038 Vigna mungo HOM05D001660 ORTHO05D003277 7.8e-20 102.4 141 40.4
ATR0787G139 Amborella trichopoda HOM05D001660 ORTHO05D003277 1.0e-19 102.1 141 36.9
FvH4_3g04040 Fragaria vesca HOM05D001660 ORTHO05D003277 1.0e-19 102.1 141 37.6
Nn1g03908 Nelumbo nucifera HOM05D001660 ORTHO05D003277 1.0e-19 102.1 136 37.5
PSO541G0051 Papaver somniferum HOM05D001660 ORTHO05D003277 1.0e-19 102.1 145 36.6
Hund21276 Selenicereus undatus HOM05D001660 ORTHO05D003277 1.0e-19 102.1 141 38.3
BcaC09g51218 Brassica carinata HOM05D001660 ORTHO05D003277 1.3e-19 101.7 141 38.3
BcaNung02795 Brassica carinata HOM05D001660 ORTHO05D003277 1.3e-19 101.7 141 38.3
CARHR228140 Cardamine hirsuta HOM05D001660 ORTHO05D003277 1.3e-19 101.7 141 39.0
COL.COLO4_31583 Corchorus olitorius HOM05D001660 ORTHO05D003277 1.3e-19 101.7 141 36.2
Duzib235G1360 Durio zibethinus HOM05D001660 ORTHO05D003277 1.3e-19 101.7 136 37.5
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.3e-19 101.7 141 37.6
Lalb_Chr05g0218171 Lupinus albus HOM05D001660 ORTHO05D003277 1.3e-19 101.7 136 39.7
Oeu016124.1 Olea europaea HOM05D001660 ORTHO05D003277 1.3e-19 101.7 141 39.7
CANSAT64G2883 Cannabis sativa HOM05D001660 ORTHO05D003277 1.7e-19 101.3 142 36.6
AUR62039196 Chenopodium quinoa HOM05D001660 ORTHO05D003277 1.7e-19 101.3 141 37.6
Cc02_g12460 Coffea canephora HOM05D001660 ORTHO05D003277 1.7e-19 101.3 142 39.4
Gohir.A05G165500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 1.7e-19 101.3 141 36.9
Gorai.009G173700 Gossypium raimondii HOM05D001660 ORTHO05D003277 1.7e-19 101.3 141 36.9
PSO210G1142 Papaver somniferum HOM05D001660 ORTHO05D003277 1.7e-19 101.3 141 37.6
Aa31LG6G3480 Aethionema arabicum HOM05D001660 ORTHO05D003277 2.3e-19 100.9 141 36.9
arahy.Tifrunner.gnm1.ann1.F92SL8 Arachis hypogaea HOM05D001660 ORTHO05D003277 2.3e-19 100.9 141 37.6
arahy.Tifrunner.gnm1.ann1.YQ76T0 Arachis hypogaea HOM05D001660 ORTHO05D003277 2.3e-19 100.9 141 37.6
CiPaw.09G158200 Carya illinoinensis HOM05D001660 ORTHO05D003277 2.3e-19 100.9 145 37.2
PSO832G0018 Papaver somniferum HOM05D001660 ORTHO05D003277 2.3e-19 100.9 141 37.6
Potri.005G183400 Populus trichocarpa HOM05D001660 ORTHO05D003277 2.3e-19 100.9 136 38.2
Prupe.8G053000 Prunus persica HOM05D001660 ORTHO05D003277 2.3e-19 100.9 141 38.3
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.3e-19 100.9 141 36.2
TPR.G36995 Trifolium pratense HOM05D001660 ORTHO05D003277 2.3e-19 100.9 141 36.2
AL7G32600 Arabidopsis lyrata HOM05D001660 ORTHO05D003277 3.0e-19 100.5 141 36.9
AT4G21470 Arabidopsis thaliana HOM05D001660 ORTHO05D003277 3.0e-19 100.5 141 36.9
HanXRQChr04g0124591 Helianthus annuus HOM05D001660 ORTHO05D003277 3.0e-19 100.5 141 36.9
Lj1g0015056 Lotus japonicus HOM05D001660 ORTHO05D003277 3.0e-19 100.5 141 37.6
RcHm_v2.0_Chr5g0006411 Rosa chinensis HOM05D001660 ORTHO05D003277 3.0e-19 100.5 136 39.0
Sopen02g023910 Solanum pennellii HOM05D001660 ORTHO05D003277 3.0e-19 100.5 142 38.0
THA.LOC104812699 Tarenaya hassleriana HOM05D001660 ORTHO05D003277 3.0e-19 100.5 139 38.8
C01p15390 Brassica napus HOM05D001660 ORTHO05D003277 3.9e-19 100.1 141 38.3
BolC1t01493H Brassica oleracea HOM05D001660 ORTHO05D003277 3.9e-19 100.1 141 38.3
Actinidia27000 Actinidia chinensis HOM05D001660 ORTHO05D003277 5.1e-19 99.8 141 36.2
QL04p018339 Quercus lobata HOM05D001660 ORTHO05D003277 5.1e-19 99.8 136 37.5
Sp7g19590 Schrenkiella parvula HOM05D001660 ORTHO05D003277 5.1e-19 99.8 141 37.6
Aqoxy5G02848 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 6.6e-19 99.4 141 37.6
Carub.0007s1997 Capsella rubella HOM05D001660 ORTHO05D003277 6.6e-19 99.4 141 38.3
Cfa000356 Carpinus fangiana HOM05D001660 ORTHO05D003277 6.6e-19 99.4 141 36.9
Ca_18484_v3 Cicer arietinum L. HOM05D001660 ORTHO05D003277 6.6e-19 99.4 141 35.5
MELO3C002558.2 Cucumis melo HOM05D001660 ORTHO05D003277 6.6e-19 99.4 141 36.2
Eucgr.G00853 Eucalyptus grandis HOM05D001660 ORTHO05D003277 6.6e-19 99.4 141 34.8
MCO04G323 Micromonas commoda HOM05D001660 ORTHO05D003277 6.6e-19 99.4 144 36.8
Aqoxy2G02549 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 8.6e-19 99.0 141 36.9
Lj1C1213G3 Lonicera japonica HOM05D001660 ORTHO05D003277 8.6e-19 99.0 136 37.5
CAN.G424.10 Capsicum annuum HOM05D001660 ORTHO05D003277 1.1e-18 98.6 142 37.3
Lj4g0007113 Lotus japonicus HOM05D001660 ORTHO05D003277 1.1e-18 98.6 141 36.2
Zm00001eb278020 Zea mays HOM05D001660 ORTHO05D003277 1.1e-18 98.6 141 34.8
Gohir.D05G168500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 1.5e-18 98.2 141 36.2
Os10g0464400 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D003277 1.5e-18 98.2 141 35.5
Psat5g291880 Pisum sativum HOM05D001660 ORTHO05D003277 1.5e-18 98.2 141 36.9
Sc08g0003500 Simmondsia chinensis HOM05D001660 ORTHO05D003277 1.5e-18 98.2 141 36.9
Ciclev10015592m.g Citrus clementina HOM05D001660 ORTHO05D003277 1.9e-18 97.8 141 36.2
Psat7g108520 Pisum sativum HOM05D001660 ORTHO05D003277 1.9e-18 97.8 141 35.5
Sed0021522 Sechium edule HOM05D001660 ORTHO05D003277 1.9e-18 97.8 141 36.2
Atru.chr10.2005 Acer truncatum HOM05D001660 ORTHO05D003277 7.3e-18 95.9 141 34.8
Glyma.08G058800 Glycine max HOM05D001660 ORTHO05D003277 9.6e-18 95.5 141 36.9
Lalb_Chr09g0327381 Lupinus albus HOM05D001660 ORTHO05D003277 9.6e-18 95.5 136 36.8
MBI10_g16793_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D003277 3.6e-17 93.6 141 34.0
Eucgr.G00852 Eucalyptus grandis HOM05D001660 ORTHO05D003277 4.7e-17 93.2 141 34.8
Cfa025010 Carpinus fangiana HOM05D001660 ORTHO05D003277 2.4e-16 90.9 194 30.4
Rhsim13G0170300 Rhododendron simsii HOM05D001660 ORTHO05D003277 3.1e-16 90.5 157 32.5
Migut.M01210 Erythranthe guttata HOM05D001660 ORTHO05D003277 9.9e-15 85.5 141 34.0
HanXRQChr09g0263881 Helianthus annuus HOM05D001660 ORTHO05D003277 8.4e-14 82.4 114 36.8
RcHm_v2.0_Chr5g0006461 Rosa chinensis HOM05D001660 ORTHO05D003277 8.4e-14 82.4 250 30.4
SMO201G0196 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 1.1e-13 82.0 132 33.3
arahy.Tifrunner.gnm1.ann1.SD5K22 Arachis hypogaea HOM05D001660 ORTHO05D003277 1.9e-13 81.3 124 36.3
TPR.G17001 Trifolium pratense HOM05D001660 ORTHO05D003277 1.9e-13 81.3 141 33.3
Hma1.2p1_0144F.1_g064640 Hydrangea macrophylla HOM05D001660 ORTHO05D003277 1.6e-12 78.2 141 33.3
Haze_06570 Corylus avellana HOM05D001660 ORTHO05D003277 3.5e-12 77.0 108 37.0
ClCG03G005540 Citrullus lanatus HOM05D001660 ORTHO05D003277 6.0e-12 76.3 141 31.9
Nitab4.5_0001967g0010 Nicotiana tabacum HOM05D001660 ORTHO05D003277 1.3e-11 75.1 110 40.9
HanXRQChr05g0131491 Helianthus annuus HOM05D001660 ORTHO05D003277 1.7e-11 74.7 119 33.6
arahy.Tifrunner.gnm1.ann1.8P7H9A Arachis hypogaea HOM05D001660 ORTHO05D003277 3.3e-10 70.5 109 34.9
CDE02G1461 Ceratophyllum demersum HOM05D001660 ORTHO05D003277 4.0e-08 63.5 80 38.8
vmacro03812 Vaccinium macrocarpon HOM05D001660 ORTHO05D003277 4.0e-08 63.5 80 37.5
Nn1g06756 Nelumbo nucifera HOM05D001660 ORTHO05D003277 1.5e-07 61.6 69 43.5
Dinv40484 Davidia involucrata HOM05D001660 ORTHO05D003277 6.4e-06 56.2 77 36.4


User provided reference genes

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