Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 3.6e-244 847.8 426 100.0
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 1.4e-22 111.7 170 38.2
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 3.5e-21 107.1 194 37.1
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 2.1e-18 97.8 216 32.4
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 2.7e-18 97.4 207 33.8
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 4.7e-18 96.7 171 33.3
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 8.0e-18 95.9 171 36.3
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 8.0e-18 95.9 180 33.9
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 1.0e-17 95.5 171 35.1
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 1.4e-17 95.1 171 35.1
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 1.8e-17 94.7 179 34.1
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 1.8e-17 94.7 213 31.5
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 1.8e-17 94.7 203 34.0
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 1.8e-17 94.7 207 33.3
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 2.3e-17 94.4 213 31.5
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 3.0e-17 94.0 213 31.5
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 3.0e-17 94.0 171 35.1
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 4.0e-17 93.6 213 30.5
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 4.0e-17 93.6 213 30.5
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 4.0e-17 93.6 213 31.0
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 4.0e-17 93.6 213 31.0
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 4.0e-17 93.6 171 32.7
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 5.2e-17 93.2 202 33.2
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 5.2e-17 93.2 179 35.2
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 5.2e-17 93.2 171 35.1
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 6.8e-17 92.8 213 31.5
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 6.8e-17 92.8 207 31.4
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 6.8e-17 92.8 213 31.0
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 6.8e-17 92.8 207 31.4
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 6.8e-17 92.8 207 31.4
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 6.8e-17 92.8 204 33.8
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 6.8e-17 92.8 175 33.1
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 6.8e-17 92.8 171 33.9
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 6.8e-17 92.8 201 32.8
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 8.8e-17 92.4 213 31.0
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 8.8e-17 92.4 207 30.9
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 8.8e-17 92.4 204 33.8
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 1.2e-16 92.0 213 30.5
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 1.2e-16 92.0 171 35.7
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 1.2e-16 92.0 205 32.7
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 1.5e-16 91.7 171 34.5
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 1.5e-16 91.7 176 33.5
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 1.5e-16 91.7 216 31.0
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 2.0e-16 91.3 201 33.8
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 2.0e-16 91.3 171 33.9
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 2.6e-16 90.9 171 35.1
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 2.6e-16 90.9 207 30.9
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 2.6e-16 90.9 171 34.5
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 2.6e-16 90.9 171 33.9
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 3.4e-16 90.5 171 34.5
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 3.4e-16 90.5 171 33.9
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 3.4e-16 90.5 208 31.7
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 4.4e-16 90.1 171 34.5
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 4.4e-16 90.1 171 34.5
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 4.4e-16 90.1 201 31.3
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 5.7e-16 89.7 171 33.9
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 5.7e-16 89.7 171 34.5
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 5.7e-16 89.7 171 33.9
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 5.7e-16 89.7 171 32.7
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 7.5e-16 89.4 171 33.3
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 7.5e-16 89.4 216 32.4
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 7.5e-16 89.4 171 33.3
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 1.7e-15 88.2 216 31.5
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 1.7e-15 88.2 213 29.6
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 1.7e-15 88.2 175 33.1
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 1.7e-15 88.2 171 32.7
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 2.2e-15 87.8 171 32.2
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 2.2e-15 87.8 171 32.7
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 2.2e-15 87.8 205 31.7
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 2.8e-15 87.4 171 33.3
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 2.8e-15 87.4 207 31.4
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 2.8e-15 87.4 171 32.2
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 2.8e-15 87.4 211 32.2
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 2.8e-15 87.4 175 33.1
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 2.8e-15 87.4 216 30.6
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 2.8e-15 87.4 171 32.7
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 2.8e-15 87.4 171 32.7
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 2.8e-15 87.4 171 32.2
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 3.7e-15 87.0 171 31.6
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 3.7e-15 87.0 207 31.4
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 3.7e-15 87.0 171 32.7
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 3.7e-15 87.0 171 32.7
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 3.7e-15 87.0 171 32.7
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 4.8e-15 86.7 175 33.7
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 6.3e-15 86.3 171 31.6
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 6.3e-15 86.3 175 33.7
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 6.3e-15 86.3 175 32.0
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 1.1e-14 85.5 171 32.2
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 1.4e-14 85.1 175 31.4
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 1.8e-14 84.7 171 33.3
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 2.4e-14 84.3 171 31.6
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 3.1e-14 84.0 159 33.3
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 3.1e-14 84.0 169 34.9
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 4.1e-14 83.6 175 30.9
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 4.1e-14 83.6 179 33.0
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 9.1e-14 82.4 175 32.6
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.2e-13 82.0 181 32.6
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.6e-13 81.6 171 31.0
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 2.0e-13 81.3 160 34.4
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 2.7e-13 80.9 174 32.8
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 2.7e-13 80.9 182 31.3
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 3.5e-13 80.5 140 32.1
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 7.7e-13 79.3 195 30.8
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 7.7e-13 79.3 172 30.8
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 2.9e-12 77.4 171 32.2
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 6.5e-12 76.3 175 30.9
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 8.5e-12 75.9 156 32.1
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 2.1e-10 71.2 106 37.7
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 3.6e-10 70.5 156 30.8
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 1.0e-09 68.9 143 34.3
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 3.0e-09 67.4 136 33.8
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 2.6e-08 64.3 101 33.7


User provided reference genes

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