Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 6.7e-208 727.2 405 100.0
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 1.0e-38 165.2 399 34.1
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 8.1e-36 155.6 402 33.6
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.3e-35 154.1 399 32.8
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 1.2e-34 151.8 402 32.3
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.5e-34 151.4 401 32.4
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 2.0e-34 151.0 402 32.3
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 9.9e-34 148.7 404 33.2
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.2e-33 147.5 399 31.6
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.9e-33 147.1 404 31.7
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 3.7e-33 146.7 403 31.0
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 8.3e-33 145.6 408 31.1
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 8.3e-33 145.6 402 31.1
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.1e-32 145.2 408 31.1
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.1e-32 145.2 402 31.6
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 1.1e-32 145.2 400 31.2
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.4e-32 144.8 399 31.6
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.9e-32 144.4 406 30.5
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 2.4e-32 144.1 402 30.6
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 4.1e-32 143.3 402 31.1
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 5.4e-32 142.9 403 31.3
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 7.1e-32 142.5 400 30.8
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 7.1e-32 142.5 400 30.8
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 9.2e-32 142.1 402 31.3
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.2e-31 141.7 401 31.7
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.6e-31 141.4 402 32.1
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.6e-31 141.4 402 30.8
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 2.1e-31 141.0 408 29.2
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.7e-31 140.6 404 30.7
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 2.7e-31 140.6 402 31.3
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 3.5e-31 140.2 404 30.4
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 4.6e-31 139.8 405 29.4
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 4.6e-31 139.8 400 31.0
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.0e-30 138.7 400 30.5
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.0e-30 138.7 401 31.4
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.0e-30 138.7 404 30.4
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 2.3e-30 137.5 400 30.5
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 5.1e-30 136.3 399 29.3
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 6.6e-30 136.0 405 30.6
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 6.6e-30 136.0 402 30.6
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 8.6e-30 135.6 405 30.4
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 8.6e-30 135.6 405 28.9
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 8.6e-30 135.6 406 30.8
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 1.5e-29 134.8 404 29.5
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.5e-29 134.8 402 29.4
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.9e-29 134.4 401 30.9
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.9e-29 134.4 402 30.6
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 2.5e-29 134.0 406 31.0
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 3.3e-29 133.7 405 29.4
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 4.3e-29 133.3 403 30.0
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 5.6e-29 132.9 402 29.1
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 5.6e-29 132.9 400 29.8
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 7.3e-29 132.5 406 28.8
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 7.3e-29 132.5 397 29.5
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 7.3e-29 132.5 401 29.2
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 7.3e-29 132.5 432 29.2
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 7.3e-29 132.5 402 29.1
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 9.5e-29 132.1 409 29.6
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.2e-28 131.7 278 34.9
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.2e-28 131.7 425 29.4
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.1e-28 131.0 406 30.3
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.1e-28 131.0 406 30.3
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.1e-28 131.0 406 30.0
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 2.1e-28 131.0 397 29.5
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 3.6e-28 130.2 400 29.5
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 4.7e-28 129.8 401 30.9
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 4.7e-28 129.8 333 32.1
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 6.2e-28 129.4 400 29.5
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 8.1e-28 129.0 402 28.6
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 8.1e-28 129.0 402 28.6
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 1.1e-27 128.6 400 29.8
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 1.4e-27 128.3 406 29.3
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 2.4e-27 127.5 404 30.0
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 3.1e-27 127.1 404 29.5
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 4.0e-27 126.7 404 29.2
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 5.2e-27 126.3 405 28.4
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 5.8e-26 122.9 402 29.6
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 5.8e-26 122.9 402 29.6
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 9.9e-26 122.1 407 29.0
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 1.3e-25 121.7 397 28.0
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.3e-25 121.7 402 28.6
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 4.9e-25 119.8 400 30.0
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 6.4e-25 119.4 397 28.7
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 6.4e-25 119.4 406 30.8
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 1.9e-24 117.9 407 28.3
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.9e-24 117.9 404 29.7
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.2e-24 116.7 397 28.5
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 9.2e-24 115.5 401 29.2
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.6e-23 114.8 404 29.5
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 3.5e-23 113.6 292 32.2
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 4.6e-23 113.2 435 29.2
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.3e-22 110.9 395 28.6
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 5.1e-22 109.8 279 33.7
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 1.1e-21 108.6 406 26.8
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.9e-21 107.8 285 30.5
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.2e-20 105.1 414 28.3
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.6e-20 103.6 408 27.2
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 3.6e-20 103.6 418 28.5
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.1e-19 102.1 304 27.6
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.4e-19 101.7 206 33.5
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 2.0e-18 97.8 406 28.1
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 4.4e-18 96.7 297 27.9
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.9e-16 91.3 305 27.9
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.5e-13 81.6 296 25.0
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 1.5e-13 81.6 398 27.4
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.9e-13 81.3 185 34.6
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.6e-12 78.2 241 26.6
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 4.8e-12 76.6 519 23.9
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.7e-09 68.2 208 32.2
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 7.1e-08 62.8 146 35.6
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 2.3e-06 57.8 128 32.0


User provided reference genes

Program Settings