Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 2079.3 1089 100.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1148.7 1036 58.0
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1139.0 1065 56.4
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1133.6 1054 55.4
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1131.3 1027 56.1
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1130.9 1053 55.7
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1129.4 1039 55.8
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1129.0 1047 55.8
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1128.6 1053 55.6
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1127.1 1093 54.3
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1122.8 1001 56.4
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1122.1 1007 55.7
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1122.1 1049 54.8
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1121.7 1051 55.5
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1121.3 1023 55.6
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1120.9 1078 54.4
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1120.9 1071 54.8
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1120.1 1085 54.2
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1119.0 1078 54.5
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1118.6 1054 54.8
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1118.6 1048 55.1
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1117.8 1039 55.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1117.8 1053 55.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1117.4 1052 54.7
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1117.1 1062 54.7
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1117.1 1088 54.7
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1116.7 1016 57.8
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1115.9 1009 56.3
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1115.1 1001 56.3
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1115.1 1006 56.1
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1113.2 1031 55.5
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1113.2 1022 55.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1112.4 1028 55.3
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1111.7 1086 53.1
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1111.7 1027 55.3
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1111.3 1082 53.8
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1110.9 983 58.1
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1110.5 1024 55.3
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1108.6 1000 56.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1108.6 1093 53.2
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1108.6 1061 54.6
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1107.4 1031 55.3
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1105.1 1006 55.7
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1103.6 1092 52.8
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1103.6 1038 54.5
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1102.8 1028 55.1
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1101.7 1006 54.8
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1101.7 1060 54.2
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1100.9 1028 54.6
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1100.9 1028 55.1
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1099.3 1069 53.6
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1099.3 1028 54.8
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1098.6 1046 55.0
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1098.2 1052 54.0
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1097.8 1041 53.4
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1097.8 1085 53.1
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1097.4 1058 54.3
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1096.3 1055 53.9
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1094.7 1072 52.9
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1093.6 1076 53.4
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1093.2 1025 54.3
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1093.2 1042 53.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1092.8 1073 54.0
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1092.4 1127 52.4
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1092.4 1076 52.7
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1092.4 1090 53.3
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1092.0 1076 53.3
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1091.6 1041 54.2
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1091.6 1052 53.6
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1090.5 1056 53.7
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1089.3 1059 53.3
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1089.3 1069 52.9
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1088.9 1076 53.3
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1088.6 1030 54.0
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1087.4 1096 52.3
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1086.2 1064 53.1
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1085.9 1028 54.2
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1084.7 1043 53.4
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1084.3 1076 53.0
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1084.3 1069 53.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1083.6 1066 54.0
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1083.2 1045 53.3
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1083.2 1076 53.4
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1082.8 1065 53.0
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1081.6 1076 52.9
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1081.2 1059 53.2
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1080.9 1084 52.5
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1080.1 1113 51.3
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1080.1 1075 52.8
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1078.2 1076 52.5
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1077.8 1061 53.5
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1076.6 1146 50.4
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1075.8 1021 54.2
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1075.8 1036 53.9
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 7.4e-312 1074.7 1077 52.7
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 7.4e-312 1074.3 1076 52.8
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 7.4e-312 1073.9 1076 52.7
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 7.4e-312 1073.9 1077 52.5
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 2.2e-311 1072.4 1096 52.6
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 1.5e-310 1069.7 1000 54.2
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 9.6e-310 1067.0 1030 53.8
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 8.1e-309 1063.9 1074 52.9
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 2.4e-308 1062.4 1028 55.3
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 2.4e-308 1062.4 1006 53.8
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 6.9e-308 1060.8 1075 52.2
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 8.4e-306 1053.9 1037 53.1
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 4.2e-305 1051.6 1146 50.3
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 7.1e-305 1050.8 1067 52.3
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 6.0e-304 1047.7 994 54.7
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 1.0e-303 1047.0 1029 53.3
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 1.1e-302 1043.5 1119 50.5
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 1.0e-298 1030.4 1146 48.3
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 6.3e-293 1011.1 1027 50.9
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-290 1002.7 1045 51.4
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 7.9e-288 994.2 952 52.9
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 5.7e-286 988.0 938 53.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 5.0e-274 948.3 894 53.6
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 1.1e-273 947.2 1090 48.3
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 1.5e-249 867.1 1069 46.3
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 7.2e-249 864.8 1069 45.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 5.4e-244 848.6 826 52.8
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.9e-236 823.5 999 44.3
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 6.0e-227 792.0 802 52.4
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 2.3e-223 780.0 706 56.2
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 1.3e-208 731.1 1087 39.7
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 2.8e-208 729.9 766 50.9
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 1.2e-203 714.5 708 52.5
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.5e-198 697.6 802 49.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.6e-184 651.0 591 56.3
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 3.2e-180 636.7 757 45.8
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.0e-170 605.1 820 43.0
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 2.6e-161 573.9 901 38.2
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 9.7e-161 572.0 683 47.9
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.0e-149 533.1 608 47.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.6e-139 500.4 639 44.9
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.5e-132 478.4 426 56.8
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.4e-129 467.2 636 41.8
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.9e-117 427.2 372 57.8
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 4.1e-111 407.1 436 51.4
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 4.1e-111 407.1 415 52.0
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-107 394.8 963 31.0
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.6e-105 387.9 983 31.4
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 4.1e-103 380.6 998 30.2
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 8.6e-101 372.9 404 46.5
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.1e-100 372.5 419 49.2
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.9e-100 371.7 412 50.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.9e-95 355.1 896 31.9
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.4e-95 353.6 533 38.6
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.9e-92 345.1 338 54.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 6.2e-91 340.1 333 52.6
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.1e-90 339.3 320 55.0
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 2.6e-89 334.7 340 51.5
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 3.0e-85 321.2 404 43.1
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 2.2e-72 278.5 255 58.4
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.6e-67 262.3 153 77.1
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 5.3e-66 257.3 234 55.6
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 7.7e-41 173.7 884 23.6
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.0e-37 163.3 166 51.8
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 2.8e-35 155.2 477 26.8
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-33 149.8 153 47.7
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.6e-33 149.4 163 44.8
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.6e-33 149.4 125 60.8
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 4.5e-33 147.9 221 37.6
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.4e-29 136.3 216 39.4
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 8.8e-29 133.7 446 27.4
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 8.3e-27 127.1 324 26.9
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 2.4e-26 125.6 147 44.2
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 3.6e-22 111.7 118 44.9
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-19 102.4 231 30.3
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.0e-16 93.6 284 28.2
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 6.6e-16 90.9 196 31.6
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 4.7e-14 84.7 113 40.7
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 3.7e-11 75.1 142 36.6
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-09 70.1 80 42.5
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.1e-07 63.5 71 46.5
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.6e-06 59.7 84 41.7


User provided reference genes

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