Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g019700 Chlamydomonas reinhardtii HOM05D002414 ORTHO05D141675 0.0e+00 2690.2 2016 100.0
Cre14.g612150 Chlamydomonas reinhardtii HOM05D002414 ORTHO05D002531 1.9e-29 136.7 475 27.8
Cre06.g280420 Chlamydomonas reinhardtii HOM05D002414 ORTHO05D002531 1.7e-17 97.1 228 30.7
Cre06.g279474 Chlamydomonas reinhardtii HOM05D002414 ORTHO05D002531 3.0e-14 86.3 380 24.7
SMO141G0048 Selaginella moellendorffii HOM05D002414 ORTHO05D002531 1.4e-11 77.4 225 28.9
Carub.0005s1162 Capsella rubella HOM05D002414 ORTHO05D002531 1.8e-11 77.0 224 29.5
QL08p061332 Quercus lobata HOM05D002414 ORTHO05D002531 1.2e-10 74.3 211 28.9
Haze_17118 Corylus avellana HOM05D002414 ORTHO05D002531 2.0e-10 73.6 213 30.0
Cfa001425 Carpinus fangiana HOM05D002414 ORTHO05D002531 2.6e-10 73.2 213 29.1
CiPaw.01G291400 Carya illinoinensis HOM05D002414 ORTHO05D002531 3.4e-10 72.8 214 29.0
Pp3c9_24560 Physcomitrium patens HOM05D002414 ORTHO05D002531 4.5e-10 72.4 241 27.4
Pp3c9_24568 Physcomitrium patens HOM05D002414 ORTHO05D002531 4.5e-10 72.4 241 27.4
QL08p061313 Quercus lobata HOM05D002414 ORTHO05D002531 1.3e-09 70.9 214 28.5
PGR142G0412 Punica granatum HOM05D002414 ORTHO05D002531 1.7e-09 70.5 218 28.4
Hma1.2p1_0026F.1_g016280 Hydrangea macrophylla HOM05D002414 ORTHO05D002531 2.2e-09 70.1 214 28.5
Prupe.2G239800 Prunus persica HOM05D002414 ORTHO05D002531 3.8e-09 69.3 213 27.7
CANSAT56G0766 Cannabis sativa HOM05D002414 ORTHO05D002531 4.9e-09 68.9 211 28.0
COL.COLO4_25492 Corchorus olitorius HOM05D002414 ORTHO05D002531 4.9e-09 68.9 217 28.6
AL5G24390 Arabidopsis lyrata HOM05D002414 ORTHO05D002531 6.5e-09 68.6 211 28.0
TAR369G0879 Trochodendron aralioides HOM05D002414 ORTHO05D002531 6.5e-09 68.6 219 27.9
AagrBONN_evm.TU.Sc2ySwM_117.2729 Anthoceros agrestis HOM05D002414 ORTHO05D002531 1.1e-08 67.8 191 30.9
AT3G45750 Arabidopsis thaliana HOM05D002414 ORTHO05D002531 1.4e-08 67.4 211 27.5
arahy.Tifrunner.gnm1.ann1.8S2BPT Arachis hypogaea HOM05D002414 ORTHO05D002531 1.4e-08 67.4 211 28.0
arahy.Tifrunner.gnm1.ann1.AGZ93U Arachis hypogaea HOM05D002414 ORTHO05D002531 1.4e-08 67.4 211 28.4
Sp4g22010 Schrenkiella parvula HOM05D002414 ORTHO05D002531 1.4e-08 67.4 217 28.1
Atru.chr12.362 Acer truncatum HOM05D002414 ORTHO05D002531 3.2e-08 66.2 213 28.2
Ciclev10031537m.g Citrus clementina HOM05D002414 ORTHO05D002531 3.2e-08 66.2 213 30.0
Actinidia02921 Actinidia chinensis HOM05D002414 ORTHO05D002531 4.2e-08 65.9 214 28.5
Glyma.18G034900 Glycine max HOM05D002414 ORTHO05D002531 4.2e-08 65.9 214 26.2
Lj2g0015546 Lotus japonicus HOM05D002414 ORTHO05D002531 4.2e-08 65.9 213 25.8
Phvul.001G236100 Phaseolus vulgaris HOM05D002414 ORTHO05D002531 4.2e-08 65.9 214 26.6
A04p30290 Brassica napus HOM05D002414 ORTHO05D002531 5.5e-08 65.5 217 27.6
BraA04t18478Z Brassica rapa HOM05D002414 ORTHO05D002531 5.5e-08 65.5 217 27.6
Lalb_Chr15g0084551 Lupinus albus HOM05D002414 ORTHO05D002531 5.5e-08 65.5 216 27.3
Atru.chr12.379 Acer truncatum HOM05D002414 ORTHO05D002531 7.1e-08 65.1 213 27.7
BcaB06g29102 Brassica carinata HOM05D002414 ORTHO05D002531 7.1e-08 65.1 217 27.6
BcaC02g07434 Brassica carinata HOM05D002414 ORTHO05D002531 7.1e-08 65.1 221 28.5
Cpa.g.sc19.271 Carica papaya HOM05D002414 ORTHO05D002531 7.1e-08 65.1 213 28.6
Glyma.11G222700 Glycine max HOM05D002414 ORTHO05D002531 7.1e-08 65.1 214 25.7
HanXRQChr08g0221161 Helianthus annuus HOM05D002414 ORTHO05D002531 7.1e-08 65.1 223 27.4
ATR0559G259 Amborella trichopoda HOM05D002414 ORTHO05D002531 9.3e-08 64.7 220 27.7
Lsat_1_v5_gn_8_14881 Lactuca sativa HOM05D002414 ORTHO05D002531 9.3e-08 64.7 212 28.3
C04p67550 Brassica napus HOM05D002414 ORTHO05D002531 1.2e-07 64.3 217 28.6
Lj6g0023303 Lotus japonicus HOM05D002414 ORTHO05D002531 1.2e-07 64.3 213 25.8
Thecc.10G039300 Theobroma cacao HOM05D002414 ORTHO05D002531 1.2e-07 64.3 217 29.5
VMungo1383G2026 Vigna mungo HOM05D002414 ORTHO05D002531 1.2e-07 64.3 213 26.3
CBR_g34900 Chara braunii HOM05D002414 ORTHO05D002531 1.6e-07 63.9 220 28.2
QL08p061277 Quercus lobata HOM05D002414 ORTHO05D002531 2.1e-07 63.5 214 27.6
Ca_08189_v3 Cicer arietinum L. HOM05D002414 ORTHO05D002531 2.7e-07 63.2 214 27.6
Duzib114G0503 Durio zibethinus HOM05D002414 ORTHO05D002531 2.7e-07 63.2 219 26.5
Gohir.A10G222401 Gossypium hirsutum HOM05D002414 ORTHO05D002531 2.7e-07 63.2 217 26.7
Gohir.D10G234700 Gossypium hirsutum HOM05D002414 ORTHO05D002531 2.7e-07 63.2 217 26.7
RcHm_v2.0_Chr1g0368311 Rosa chinensis HOM05D002414 ORTHO05D002531 2.7e-07 63.2 211 27.5
GSVIVG01016481001 Vitis vinifera HOM05D002414 ORTHO05D002531 2.7e-07 63.2 213 28.6
Zm00001eb148120 Zea mays HOM05D002414 ORTHO05D002531 2.7e-07 63.2 215 24.7
ECA233G4115 Erigeron canadensis HOM05D002414 ORTHO05D002531 3.5e-07 62.8 211 27.0
Eucgr.G02961 Eucalyptus grandis HOM05D002414 ORTHO05D002531 3.5e-07 62.8 212 26.4
QL08p061292 Quercus lobata HOM05D002414 ORTHO05D002531 3.5e-07 62.8 214 28.0
TWI63G1558 Tripterygium wilfordii HOM05D002414 ORTHO05D002531 3.5e-07 62.8 217 27.6
Gorai.011G268300 Gossypium raimondii HOM05D002414 ORTHO05D002531 4.6e-07 62.4 217 27.2
Manes.10G026300 Manihot esculenta HOM05D002414 ORTHO05D002531 4.6e-07 62.4 213 28.2
Lalb_Chr18g0053061 Lupinus albus HOM05D002414 ORTHO05D002531 6.0e-07 62.0 211 26.1
Os01g0846500 Oryza sativa ssp. japonica HOM05D002414 ORTHO05D002531 6.0e-07 62.0 214 28.0
CsaV3_5G008390 Cucumis sativus L. HOM05D002414 ORTHO05D002531 7.9e-07 61.6 212 26.4
MD01G1139300 Malus domestica HOM05D002414 ORTHO05D002531 1.0e-06 61.2 163 28.8
MSTRG.27366 Avicennia marina HOM05D002414 ORTHO05D002531 1.3e-06 60.8 221 27.6
Carub.0004s2180 Capsella rubella HOM05D002414 ORTHO05D002531 1.3e-06 60.8 214 27.1
Duzib106G1475 Durio zibethinus HOM05D002414 ORTHO05D002531 1.3e-06 60.8 217 28.1
Potri.010G199500 Populus trichocarpa HOM05D002414 ORTHO05D002531 1.3e-06 60.8 215 28.4
RcHm_v2.0_Chr1g0368321 Rosa chinensis HOM05D002414 ORTHO05D002531 2.3e-06 60.1 211 26.5
AUR62040698 Chenopodium quinoa HOM05D002414 ORTHO05D002531 3.9e-06 59.3 217 26.7
MELO3C023887.2 Cucumis melo HOM05D002414 ORTHO05D002531 3.9e-06 59.3 211 26.5
Hund13795 Selenicereus undatus HOM05D002414 ORTHO05D002531 3.9e-06 59.3 223 28.3
FAN01G1411 Fragaria x ananassa HOM05D002414 ORTHO05D002531 5.1e-06 58.9 211 26.5
FAN06G1258 Fragaria x ananassa HOM05D002414 ORTHO05D002531 5.1e-06 58.9 211 26.5
FAN10G1514 Fragaria x ananassa HOM05D002414 ORTHO05D002531 5.1e-06 58.9 211 26.5
FAN10G3047 Fragaria x ananassa HOM05D002414 ORTHO05D002531 5.1e-06 58.9 211 26.5
SEGI_06959 Sequoiadendron giganteum HOM05D002414 ORTHO05D002531 5.1e-06 58.9 110 28.2
Aqoxy1G00847 Aquilegia oxysepala HOM05D002414 ORTHO05D002531 6.7e-06 58.5 231 26.0
BolC4t28252H Brassica oleracea HOM05D002414 ORTHO05D002531 6.7e-06 58.5 217 27.6
AUR62012137 Chenopodium quinoa HOM05D002414 ORTHO05D002531 6.7e-06 58.5 217 26.7
HanXRQChr03g0068371 Helianthus annuus HOM05D002414 ORTHO05D002531 6.7e-06 58.5 219 26.5
AL4G37210 Arabidopsis lyrata HOM05D002414 ORTHO05D002531 8.7e-06 58.2 214 27.6
MCO10G360 Micromonas commoda HOM05D002414 ORTHO05D002531 8.7e-06 58.2 90 36.7


User provided reference genes

Program Settings