Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g016450 Chlamydomonas reinhardtii HOM05D004492 ORTHO05D005602 0.0e+00 1321.2 989 100.0
MCO11G526 Micromonas commoda HOM05D004492 ORTHO05D005602 5.9e-43 180.6 328 41.8
Pp3c19_7630 Physcomitrium patens HOM05D004492 ORTHO05D005602 6.9e-36 157.1 330 33.0
PRCOL_00002940 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 3.8e-34 151.4 327 35.8
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 2.2e-29 135.6 331 29.0
TAR625G1407 Trochodendron aralioides HOM05D004492 ORTHO05D005602 7.0e-28 130.6 338 27.8
SMO116G0295 Selaginella moellendorffii HOM05D004492 ORTHO05D005602 9.1e-28 130.2 334 29.6
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 1.5e-27 129.4 330 30.3
AUR62030552 Chenopodium quinoa HOM05D004492 ORTHO05D005602 1.0e-26 126.7 340 28.5
ATR0684G004 Amborella trichopoda HOM05D004492 ORTHO05D005602 6.5e-26 124.0 342 27.5
HPP92_009359 Vanilla planifolia HOM05D004492 ORTHO05D005602 8.5e-26 123.6 323 29.7
AUR62004708 Chenopodium quinoa HOM05D004492 ORTHO05D005602 1.5e-25 122.9 338 27.2
ClCG03G009360 Citrullus lanatus HOM05D004492 ORTHO05D005602 1.9e-25 122.5 333 27.0
PSO170G3797 Papaver somniferum HOM05D004492 ORTHO05D005602 1.9e-25 122.5 343 27.4
Zm00001eb216690 Zea mays HOM05D004492 ORTHO05D005602 2.5e-25 122.1 352 29.3
Gohir.D02G081500 Gossypium hirsutum HOM05D004492 ORTHO05D005602 3.2e-25 121.7 342 27.5
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 3.2e-25 121.7 344 27.3
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 5.5e-25 120.9 349 26.9
Glyma.04G252800 Glycine max HOM05D004492 ORTHO05D005602 1.2e-24 119.8 338 29.0
GSVIVG01008928001 Vitis vinifera HOM05D004492 ORTHO05D005602 2.7e-24 118.6 339 27.7
Gohir.A02G074300 Gossypium hirsutum HOM05D004492 ORTHO05D005602 3.6e-24 118.2 342 27.5
Medtr3g073000 Medicago truncatula HOM05D004492 ORTHO05D005602 3.6e-24 118.2 352 27.8
EL10Ac1g00021 Beta vulgaris HOM05D004492 ORTHO05D005602 8.0e-24 117.1 346 26.6
Migut.C01175 Erythranthe guttata HOM05D004492 ORTHO05D005602 8.0e-24 117.1 350 28.0
Lj1g0007587 Lotus japonicus HOM05D004492 ORTHO05D005602 1.0e-23 116.7 355 27.6
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 3.9e-23 114.8 358 27.1
THA.LOC104813139 Tarenaya hassleriana HOM05D004492 ORTHO05D005602 6.7e-23 114.0 342 27.2
A07p03030 Brassica napus HOM05D004492 ORTHO05D005602 8.8e-23 113.6 326 26.7
BcaC06g36340 Brassica carinata HOM05D004492 ORTHO05D005602 1.5e-22 112.8 326 26.7
Sp3g31340 Schrenkiella parvula HOM05D004492 ORTHO05D005602 1.5e-22 112.8 325 26.5
BcaB03g16570 Brassica carinata HOM05D004492 ORTHO05D005602 2.0e-22 112.5 325 26.8
BraA07t28100Z Brassica rapa HOM05D004492 ORTHO05D005602 3.3e-22 111.7 326 26.4
Aa31LG9G14390 Aethionema arabicum HOM05D004492 ORTHO05D005602 9.7e-22 110.2 344 26.5
Thhalv10022664m.g Eutrema salsugineum HOM05D004492 ORTHO05D005602 9.7e-22 110.2 324 27.2
Gorai.005G091200 Gossypium raimondii HOM05D004492 ORTHO05D005602 1.3e-21 109.8 344 27.0
Oeu047923.1 Olea europaea HOM05D004492 ORTHO05D005602 8.2e-21 107.1 348 26.1
C07p05160 Brassica napus HOM05D004492 ORTHO05D005602 1.4e-20 106.3 327 26.3
BolC7t40914H Brassica oleracea HOM05D004492 ORTHO05D005602 1.4e-20 106.3 327 26.3
arahy.Tifrunner.gnm1.ann1.WF7TJ5 Arachis hypogaea HOM05D004492 ORTHO05D005602 5.3e-20 104.4 343 25.9
CBR_g16883 Chara braunii HOM05D004492 ORTHO05D001303 5.3e-20 104.4 329 30.4
Psat5g133640 Pisum sativum HOM05D004492 ORTHO05D005602 1.2e-19 103.2 105 45.7
SalBow7G0677 Salvia bowleyana HOM05D004492 ORTHO05D005602 1.2e-19 103.2 347 25.9
SalBow7G1607 Salvia bowleyana HOM05D004492 ORTHO05D005602 2.0e-19 102.4 349 26.4
TPR.G22341 Trifolium pratense HOM05D004492 ORTHO05D005602 4.5e-19 101.3 105 44.8
Ca_15216_v3 Cicer arietinum L. HOM05D004492 ORTHO05D005602 5.9e-19 100.9 105 45.7
DCAR_002659 Daucus carota HOM05D004492 ORTHO05D005602 7.7e-19 100.5 105 44.8
Cpa.g.sc36.10 Carica papaya HOM05D004492 ORTHO05D005602 1.0e-18 100.1 102 44.1
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 1.3e-18 99.8 97 47.4
Prupe.1G503800 Prunus persica HOM05D004492 ORTHO05D005602 1.3e-18 99.8 105 43.8
Manes.18G073743 Manihot esculenta HOM05D004492 ORTHO05D005602 1.7e-18 99.4 102 46.1
MELO3C003048.2 Cucumis melo HOM05D004492 ORTHO05D005602 2.2e-18 99.0 97 46.4
Actinidia29442 Actinidia chinensis HOM05D004492 ORTHO05D005602 2.9e-18 98.6 96 46.9
Atru.chr13.1338 Acer truncatum HOM05D004492 ORTHO05D005602 3.8e-18 98.2 102 45.1
Atru.chr13.1381 Acer truncatum HOM05D004492 ORTHO05D005602 3.8e-18 98.2 102 45.1
CSS0028158 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 5.0e-18 97.8 94 46.8
CSS0038302 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 5.0e-18 97.8 94 46.8
Lsat_1_v5_gn_6_109160 Lactuca sativa HOM05D004492 ORTHO05D005602 5.0e-18 97.8 96 46.9
Lj7C323T6 Lonicera japonica HOM05D004492 ORTHO05D005602 5.0e-18 97.8 102 45.1
Ah.05g172340 Amaranthus hybridus HOM05D004492 ORTHO05D005602 6.5e-18 97.4 102 43.1
arahy.Tifrunner.gnm1.ann1.Y35QAD Arachis hypogaea HOM05D004492 ORTHO05D005602 6.5e-18 97.4 301 26.6
Sed0009263 Sechium edule HOM05D004492 ORTHO05D005602 6.5e-18 97.4 97 46.4
VMungo1309G2182 Vigna mungo HOM05D004492 ORTHO05D005602 6.5e-18 97.4 105 42.9
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 8.5e-18 97.1 102 45.1
HanXRQChr05g0149221 Helianthus annuus HOM05D004492 ORTHO05D005602 8.5e-18 97.1 102 45.1
Lalb_Chr08g0241631 Lupinus albus HOM05D004492 ORTHO05D005602 8.5e-18 97.1 105 42.9
Phvul.009G121500 Phaseolus vulgaris HOM05D004492 ORTHO05D005602 8.5e-18 97.1 105 42.9
unitig_46.g18495 Utricularia gibba HOM05D004492 ORTHO05D005602 8.5e-18 97.1 91 49.5
Aqoxy5G02431 Aquilegia oxysepala HOM05D004492 ORTHO05D005602 1.1e-17 96.7 97 45.4
MD15G1356600 Malus domestica HOM05D004492 ORTHO05D005602 1.1e-17 96.7 102 43.1
CiPaw.06G026300 Carya illinoinensis HOM05D004492 ORTHO05D005602 1.5e-17 96.3 102 43.1
Ciclev10001105m.g Citrus clementina HOM05D004492 ORTHO05D005602 1.5e-17 96.3 102 44.1
Migut.C01177 Erythranthe guttata HOM05D004492 ORTHO05D005602 1.5e-17 96.3 354 24.6
MSTRG.25402 Avicennia marina HOM05D004492 ORTHO05D005602 1.9e-17 95.9 99 46.5
Sc23g0000850 Simmondsia chinensis HOM05D004492 ORTHO05D005602 1.9e-17 95.9 102 44.1
FAN24G0496 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.5e-17 95.5 96 43.8
TWI12G1231 Tripterygium wilfordii HOM05D004492 ORTHO05D005602 2.5e-17 95.5 99 42.4
Sopen06g020530 Solanum pennellii HOM05D004492 ORTHO05D005602 3.2e-17 95.1 97 44.3
Potri.005G173100 Populus trichocarpa HOM05D004492 ORTHO05D005602 4.2e-17 94.7 102 42.2
Dinv27371 Davidia involucrata HOM05D004492 ORTHO05D005602 5.5e-17 94.4 102 43.1
FvH4_2g26280 Fragaria vesca HOM05D004492 ORTHO05D005602 5.5e-17 94.4 96 42.7
PGSC0003DMG400017559 Solanum tuberosum HOM05D004492 ORTHO05D005602 5.5e-17 94.4 97 43.3
CAN.G1396.8 Capsicum annuum HOM05D004492 ORTHO05D005602 9.4e-17 93.6 97 43.3
RcHm_v2.0_Chr6g0294891 Rosa chinensis HOM05D004492 ORTHO05D005602 9.4e-17 93.6 96 42.7
SEGI_04710 Sequoiadendron giganteum HOM05D004492 ORTHO05D005602 9.4e-17 93.6 92 46.7
Solyc06g060390.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 9.4e-17 93.6 91 45.1
CDE11G0913 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 1.2e-16 93.2 91 47.3
ECA246G3183 Erigeron canadensis HOM05D004492 ORTHO05D005602 1.2e-16 93.2 96 43.8
Sabra05G0130600 Salix brachista HOM05D004492 ORTHO05D005602 1.2e-16 93.2 102 41.2
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 1.6e-16 92.8 326 25.5
Nitab4.5_0000633g0160 Nicotiana tabacum HOM05D004492 ORTHO05D005602 2.1e-16 92.4 97 42.3
Thecc.08G118700 Theobroma cacao HOM05D004492 ORTHO05D005602 8.0e-16 90.5 96 41.7
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 1.0e-15 90.1 96 41.7
CANSAT11G0049 Cannabis sativa HOM05D004492 ORTHO05D005602 1.4e-15 89.7 91 44.0
Duzib093G1652 Durio zibethinus HOM05D004492 ORTHO05D005602 1.8e-15 89.4 91 44.0
Nitab4.5_0004882g0030 Nicotiana tabacum HOM05D004492 ORTHO05D005602 1.8e-15 89.4 91 42.9
Hma1.2p1_0038F.1_g023980 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 4.0e-15 88.2 91 44.0
COL.COLO4_38233 Corchorus olitorius HOM05D004492 ORTHO05D005602 1.2e-14 86.7 96 39.6
Glyma.06G109667 Glycine max HOM05D004492 ORTHO05D005602 2.6e-14 85.5 94 41.5
Peaxi162Scf00051g00731 Petunia axillaris HOM05D004492 ORTHO05D005602 2.8e-13 82.0 79 45.6
SGA_v2.0_scaffold52G19008 Striga asiatica HOM05D004492 ORTHO05D005602 8.3e-13 80.5 324 25.0
RcHm_v2.0_Chr6g0294881 Rosa chinensis HOM05D004492 ORTHO05D005602 2.4e-12 79.0 102 37.3
Carub.0003s3205 Capsella rubella HOM05D004492 ORTHO05D005602 4.1e-12 78.2 91 35.2
SHI09394 Sapria himalayana HOM05D004492 ORTHO05D000001 4.1e-12 78.2 97 38.1
AL3G50940 Arabidopsis lyrata HOM05D004492 ORTHO05D005602 7.0e-12 77.4 91 35.2
AT2G17900 Arabidopsis thaliana HOM05D004492 ORTHO05D005602 7.0e-12 77.4 91 35.2
Cfa015974 Carpinus fangiana HOM05D004492 ORTHO05D005602 7.0e-12 77.4 72 47.2
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 1.6e-11 76.3 98 35.7
Cc10_g10530 Coffea canephora HOM05D004492 ORTHO05D005602 3.5e-11 75.1 75 48.0
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 3.5e-11 75.1 69 47.8
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 7.7e-11 73.9 90 37.8
Hma1.2p1_0038F.1_g023990 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 2.9e-10 72.0 66 48.5
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 5.0e-10 71.2 95 35.8
COL.COLO4_38230 Corchorus olitorius HOM05D004492 ORTHO05D005602 1.9e-09 69.3 313 24.0
Migut.C01176 Erythranthe guttata HOM05D004492 ORTHO05D005602 1.9e-09 69.3 91 33.0
Thecc.08G119200 Theobroma cacao HOM05D004492 ORTHO05D005602 5.5e-09 67.8 88 36.4
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 9.4e-09 67.0 88 35.2
Lj7A312G16 Lonicera japonica HOM05D004492 ORTHO05D005602 1.2e-08 66.6 99 38.4
FAN15G0234 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.6e-08 66.2 96 36.5
MCO03G306 Micromonas commoda HOM05D004492 ORTHO05D005602 2.1e-08 65.9 160 30.0
Os03g0704200 Oryza sativa ssp. japonica HOM05D004492 ORTHO05D005602 3.6e-08 65.1 112 42.0
COL.COLO4_38232 Corchorus olitorius HOM05D004492 ORTHO05D005602 4.7e-08 64.7 316 21.5
Cfa024297 Carpinus fangiana HOM05D004492 ORTHO05D005602 6.1e-08 64.3 94 36.2
CARHR108400 Cardamine hirsuta HOM05D004492 ORTHO05D005602 3.0e-07 62.0 70 37.1
PRCOL_00006858 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 3.4e-06 58.5 72 41.7
Cre15.g639056 Chlamydomonas reinhardtii HOM05D003388 ORTHO05D145848 5.7e-06 57.8 110 38.2
FAN15G1155 Fragaria x ananassa HOM05D004492 ORTHO05D005602 5.7e-06 57.8 96 29.2
Cre13.g580550 Chlamydomonas reinhardtii HOM05D004492 ORTHO05D005602 7.5e-06 57.4 110 35.5
FvH4_2g26270 Fragaria vesca HOM05D004492 ORTHO05D005602 9.8e-06 57.0 96 29.2


User provided reference genes

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