Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 0.0e+00 4906.7 2710 100.0
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 0.0e+00 1485.3 2735 39.6
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 0.0e+00 1444.1 2673 39.1
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1391.7 2718 36.7
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1384.8 2734 36.7
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 0.0e+00 1374.4 2723 36.5
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1368.6 2704 37.0
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1367.8 2734 36.4
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 0.0e+00 1367.4 2704 37.0
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 1367.4 2703 36.7
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 0.0e+00 1365.5 2767 36.1
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 0.0e+00 1362.4 2500 38.1
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 0.0e+00 1361.3 2744 36.0
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 0.0e+00 1360.5 2746 36.5
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 0.0e+00 1358.2 2663 36.5
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 0.0e+00 1356.7 2725 36.7
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 1356.3 2502 38.4
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1355.5 2724 36.6
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 0.0e+00 1353.2 2695 36.5
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 0.0e+00 1351.7 2721 36.3
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1351.3 2722 36.4
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 0.0e+00 1351.3 2675 38.4
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 0.0e+00 1350.1 2713 36.4
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1349.3 2722 36.3
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 0.0e+00 1339.3 2708 36.8
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 0.0e+00 1339.3 2650 36.7
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 0.0e+00 1336.6 2727 36.0
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 0.0e+00 1331.2 2706 36.5
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 0.0e+00 1328.5 2680 36.5
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 0.0e+00 1327.4 2724 36.2
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 0.0e+00 1325.5 2732 36.1
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 0.0e+00 1323.9 2740 36.0
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 0.0e+00 1318.1 2710 35.6
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1312.4 2705 35.9
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1309.7 2688 36.0
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1307.0 2693 35.8
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 0.0e+00 1303.1 2737 35.3
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 0.0e+00 1301.6 2728 35.6
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 0.0e+00 1301.6 2737 35.8
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 1298.9 2825 35.3
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 0.0e+00 1290.0 2677 35.9
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 0.0e+00 1289.6 2713 35.5
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 0.0e+00 1285.4 2721 35.7
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 0.0e+00 1281.9 2695 35.7
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 0.0e+00 1280.4 2362 37.8
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1278.1 2650 35.6
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 0.0e+00 1277.7 2716 35.7
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1275.0 2691 35.5
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 0.0e+00 1271.5 2650 35.8
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 0.0e+00 1268.8 2747 35.5
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 0.0e+00 1267.7 2620 35.5
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 0.0e+00 1263.1 2563 36.1
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 1260.7 2531 36.8
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 0.0e+00 1254.2 2649 35.7
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1247.3 2650 35.6
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 0.0e+00 1247.3 2826 34.4
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1239.6 2728 35.0
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 0.0e+00 1238.8 2135 38.9
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 1231.1 1930 41.5
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 0.0e+00 1229.9 2705 34.8
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1229.2 2718 34.5
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1223.8 2702 34.6
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1223.8 2704 34.6
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 0.0e+00 1223.0 2696 34.5
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1222.6 2720 34.4
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1217.6 2704 34.6
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 0.0e+00 1216.4 2625 35.5
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 0.0e+00 1214.5 2650 34.9
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 0.0e+00 1212.6 2699 34.8
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 0.0e+00 1211.8 2709 34.4
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 0.0e+00 1210.3 2718 34.4
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1209.1 2353 37.4
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 0.0e+00 1205.7 2726 34.8
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 0.0e+00 1205.7 2674 36.0
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 0.0e+00 1205.3 1996 39.8
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 0.0e+00 1201.8 2649 34.6
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1195.6 2528 35.1
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 0.0e+00 1187.9 2751 34.4
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1180.6 1317 50.0
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 0.0e+00 1179.5 2740 34.4
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 0.0e+00 1179.1 2017 38.6
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 0.0e+00 1175.6 1632 43.5
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1165.2 2687 34.3
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1159.8 2727 34.0
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 0.0e+00 1159.4 2700 34.1
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 0.0e+00 1159.1 2681 34.0
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1157.9 1230 51.5
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 0.0e+00 1140.2 2655 33.9
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 0.0e+00 1132.5 2757 36.0
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 0.0e+00 1122.1 1457 45.4
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 0.0e+00 1122.1 1772 40.2
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1106.3 2701 33.6
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 0.0e+00 1103.2 2237 36.2
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 0.0e+00 1090.9 2534 33.9
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 0.0e+00 1082.4 2062 37.1
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 1.4e-309 1067.8 1454 44.6
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 1.2e-308 1064.7 1308 47.2
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 3.6e-305 1053.1 1239 48.7
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 2.0e-300 1037.3 1780 38.6
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 2.9e-299 1033.5 1339 46.2
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 5.2e-280 969.5 2428 33.7
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.7e-278 964.5 1280 45.2
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 4.1e-277 959.9 1269 45.6
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 6.2e-273 946.0 1017 50.0
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 7.1e-253 879.4 1284 43.3
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 8.7e-219 766.1 1952 32.4
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 8.2e-201 706.4 1736 33.1
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 9.7e-194 682.9 1604 34.0
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 1.1e-173 616.3 1674 32.1
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 3.3e-165 588.2 737 46.4
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 5.4e-160 570.9 1066 37.9
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.8e-156 558.5 463 60.5
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 2.7e-127 462.2 952 36.0
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.9e-113 414.8 733 39.0
Zm00001eb208180 Zea mays HOM05D003193 ORTHO05D004924 9.3e-104 384.0 353 56.4
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.3e-102 379.4 942 32.8
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 7.2e-96 357.8 595 39.2
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.1e-91 344.0 1457 26.9
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 4.1e-83 315.5 683 35.1
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 5.3e-83 315.1 507 40.4
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 2.2e-81 309.7 1219 28.3
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 2.3e-78 299.7 794 32.0
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 8.8e-78 297.7 1395 26.7
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 5.9e-74 285.0 1404 26.9
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 5.9e-74 285.0 1404 26.9
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 8.0e-71 274.6 461 38.6
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 8.8e-62 244.6 758 30.1
MCO13G622 Micromonas commoda HOM05D000681 ORTHO05D025872 3.1e-59 236.1 442 32.6
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.1e-56 227.6 471 36.1
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.7e-52 213.8 1098 25.7
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 3.6e-47 196.1 329 38.9
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 6.1e-47 195.3 411 33.6
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 1.0e-46 194.5 441 32.4
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.0e-46 194.5 306 39.9
Nitab4.5_0019712g0010 Nicotiana tabacum HOM05D003193 ORTHO05D004924 3.0e-46 193.0 139 65.5
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 2.1e-39 170.2 1107 23.7
Psat2g117480 Pisum sativum HOM05D003193 ORTHO05D029199 6.2e-39 168.7 148 58.8
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.5e-37 164.1 388 35.1
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 4.1e-35 156.0 210 44.3
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 9.2e-35 154.8 235 40.9
Cre04.g222700 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 9.2e-35 154.8 292 30.8
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 4.6e-34 152.5 828 26.4
PRCOL_00000464 Prasinoderma coloniale HOM05D000681 ORTHO05D025872 1.9e-32 147.1 221 36.2
Lsat_1_v5_gn_8_52980 Lactuca sativa HOM05D003193 ORTHO05D004924 5.6e-32 145.6 180 45.6
Actinidia06817 Actinidia chinensis HOM05D003193 ORTHO05D004924 3.0e-25 123.2 120 50.8
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 6.2e-23 115.5 933 25.2
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 2.4e-22 113.6 124 48.4
PRCOL_00007280 Prasinoderma coloniale HOM05D000681 ORTHO05D028791 8.9e-22 111.7 297 24.9
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 9.9e-21 108.2 136 43.4
Nitab4.5_0019712g0020 Nicotiana tabacum HOM05D003193 ORTHO05D004924 4.9e-20 105.9 77 67.5
SEGI_11076 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 3.0e-17 96.7 218 30.7
DCAR_025592 Daucus carota HOM05D003193 ORTHO05D029199 2.1e-15 90.5 54 75.9
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 2.1e-15 90.5 511 24.5
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 3.1e-14 86.7 124 44.4
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 9.0e-14 85.1 467 24.2
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 3.5e-10 73.2 864 22.5
MD04G1233900 Malus domestica HOM05D003193 ORTHO05D004924 4.6e-10 72.8 171 31.0
SEGI_09842 Sequoiadendron giganteum HOM05D003193 ORTHO05D036451 7.8e-10 72.0 74 50.0
DCAR_015795 Daucus carota HOM05D003193 ORTHO05D029199 2.3e-09 70.5 77 49.4
Actinidia06820 Actinidia chinensis HOM05D003193 ORTHO05D004924 3.9e-09 69.7 113 34.5
Lsat_1_v5_gn_8_87461 Lactuca sativa HOM05D003193 ORTHO05D000541 4.3e-08 66.2 50 64.0
Ah.02g118650 Amaranthus hybridus HOM05D003193 ORTHO05D004924 7.3e-08 65.5 74 43.2
Lsat_1_v5_gn_5_158860 Lactuca sativa HOM05D003193 ORTHO05D231496 1.6e-07 64.3 82 41.5
Actinidia06821 Actinidia chinensis HOM05D003193 ORTHO05D026302 2.8e-07 63.5 298 27.2
TWI60G1601 Tripterygium wilfordii HOM05D003193 ORTHO05D029199 2.4e-06 60.5 84 46.4
Actinidia23236 Actinidia chinensis HOM05D003193 ORTHO05D055714 5.3e-06 59.3 125 35.2
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 5.3e-06 59.3 105 34.3
Ca_08277_v3 Cicer arietinum L. HOM05D000846 ORTHO05D001340 9.0e-06 58.5 335 23.6


User provided reference genes

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