Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 9.7e-275 949.5 470 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 1.5e-118 430.6 478 46.9
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 4.2e-113 412.5 464 45.9
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.2e-110 404.4 452 46.2
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 8.6e-106 388.3 451 44.3
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.9e-105 387.1 448 43.1
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 2.5e-105 386.7 467 41.8
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.3e-105 385.2 459 43.8
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 7.3e-105 385.2 454 42.5
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 9.5e-105 384.8 455 43.1
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 4.7e-104 382.5 467 41.3
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 6.1e-104 382.1 455 42.6
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 8.0e-104 381.7 447 42.7
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 8.0e-104 381.7 456 43.0
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 1.0e-103 381.3 448 43.1
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.0e-103 381.3 489 40.9
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.4e-103 380.9 455 42.6
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.4e-103 380.9 455 42.2
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 2.3e-103 380.2 451 41.9
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 3.1e-103 379.8 455 42.2
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 4.0e-103 379.4 454 41.4
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 5.2e-103 379.0 447 42.5
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 5.2e-103 379.0 454 41.6
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 8.9e-103 378.3 449 43.7
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.2e-102 377.9 454 42.3
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.5e-102 377.5 456 43.2
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 1.5e-102 377.5 448 42.4
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 3.4e-102 376.3 448 42.2
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 5.8e-102 375.6 448 42.4
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 7.5e-102 375.2 455 43.1
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 7.5e-102 375.2 432 45.6
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 9.8e-102 374.8 455 41.8
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 9.8e-102 374.8 454 42.5
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 1.3e-101 374.4 455 42.0
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.7e-101 374.0 455 41.8
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.7e-101 374.0 455 42.6
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.7e-101 374.0 454 42.5
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 2.2e-101 373.6 454 42.7
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 2.9e-101 373.2 454 41.2
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 2.9e-101 373.2 455 42.4
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.9e-101 373.2 455 42.2
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 2.9e-101 373.2 455 43.1
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 4.9e-101 372.5 455 42.4
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 4.9e-101 372.5 455 41.3
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 6.4e-101 372.1 455 41.5
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 8.3e-101 371.7 454 41.9
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 8.3e-101 371.7 483 40.4
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.1e-100 371.3 447 42.5
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 1.1e-100 371.3 447 41.8
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.4e-100 370.9 454 42.1
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.4e-100 370.2 448 43.1
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 4.1e-100 369.4 454 41.0
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 4.1e-100 369.4 454 41.0
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 4.1e-100 369.4 454 40.7
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 5.4e-100 369.0 469 40.9
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.0e-100 368.6 455 42.9
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.2e-99 367.9 455 42.6
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.6e-99 367.5 452 41.8
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 2.0e-99 367.1 455 41.5
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.5e-99 366.3 455 43.1
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.8e-99 365.2 454 41.0
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.3e-98 364.4 456 41.2
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.7e-98 364.0 455 42.6
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 3.0e-98 363.2 457 41.8
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.0e-98 363.2 455 40.7
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 3.0e-98 363.2 454 39.4
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 5.0e-98 362.5 457 41.6
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 5.0e-98 362.5 449 42.1
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 5.0e-98 362.5 448 41.7
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.9e-97 360.5 455 39.1
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.9e-97 360.5 456 40.4
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 2.5e-97 360.1 448 39.5
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 2.5e-97 360.1 456 41.4
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 2.5e-97 360.1 459 40.5
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 7.3e-97 358.6 456 39.9
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 7.3e-97 358.6 474 40.5
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 9.5e-97 358.2 456 39.7
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.1e-96 357.1 451 41.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.1e-96 357.1 429 42.4
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 4.7e-96 355.9 445 41.8
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 6.2e-96 355.5 455 39.1
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 8.0e-96 355.1 456 39.3
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.1e-95 354.8 457 39.8
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.1e-95 353.2 455 39.8
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 4.0e-95 352.8 457 41.4
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 5.2e-95 352.4 457 39.8
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.5e-94 350.9 457 39.2
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 1.3e-93 347.8 458 40.0
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.7e-93 347.4 458 39.3
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 2.2e-93 347.1 458 39.3
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 2.2e-93 347.1 458 39.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.2e-93 347.1 465 38.5
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.9e-92 344.0 507 36.3
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 3.2e-92 343.2 453 40.0
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 9.2e-92 341.7 456 40.4
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.3e-89 332.0 477 38.2
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.1e-88 330.5 485 37.1
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 4.7e-88 329.3 393 43.5
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.8e-87 327.4 508 36.2
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 5.2e-87 325.9 448 39.3
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.9e-85 319.3 455 38.2
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 4.9e-85 319.3 389 42.4
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 8.3e-85 318.5 466 39.5
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 8.3e-85 318.5 447 40.0
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 5.4e-84 315.8 484 37.0
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.7e-82 310.8 416 39.4
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.7e-82 310.8 416 39.4
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 6.6e-82 308.9 455 38.2
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 8.6e-82 308.5 378 42.1
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.9e-81 307.4 440 40.9
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 2.5e-81 307.0 388 41.0
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 6.8e-79 298.9 372 41.4
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 6.0e-75 285.8 436 36.7
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.3e-74 284.6 416 38.2
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.0e-74 283.5 315 43.2
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 3.6e-72 276.6 316 43.7
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 9.9e-70 268.5 273 46.9
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-66 258.5 428 34.6
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 6.9e-63 245.7 464 33.2
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 5.8e-62 242.7 458 33.2
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.4e-55 220.7 554 29.1
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.4e-54 216.9 278 41.0
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 5.8e-54 216.1 220 47.3
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.8e-40 169.9 188 45.2
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.7e-34 149.4 152 48.7
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 4.5e-30 136.7 153 41.2
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.8e-26 124.8 114 49.1
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.2e-24 117.9 399 25.6
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.4e-23 114.4 115 46.1
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.1e-23 112.5 107 49.5
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 5.5e-20 103.2 120 42.5
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 1.8e-18 98.2 179 31.8
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.0e-18 97.4 98 46.9
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 3.3e-17 94.0 110 45.5
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.5e-09 68.6 88 39.8
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.4e-07 61.2 59 47.5
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 4.5e-06 57.0 61 44.3


User provided reference genes

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