Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 1.3e-140 503.1 250 100.0
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 1.1e-19 101.3 195 32.8
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.5e-19 100.9 145 41.4
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.1e-18 97.1 145 40.7
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 2.1e-18 97.1 216 36.6
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 4.7e-18 95.9 145 40.7
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 8.0e-18 95.1 150 40.0
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 8.0e-18 95.1 144 41.7
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 8.0e-18 95.1 144 41.7
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.4e-17 94.4 150 41.3
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.8e-17 94.0 215 35.8
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 1.8e-17 94.0 145 39.3
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.8e-17 94.0 141 39.7
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 2.3e-17 93.6 217 35.9
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 2.3e-17 93.6 178 37.1
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 2.3e-17 93.6 142 41.5
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.3e-17 93.6 141 39.7
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.3e-17 93.6 172 36.0
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 3.0e-17 93.2 206 35.9
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 3.0e-17 93.2 145 38.6
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 3.0e-17 93.2 196 36.7
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 3.0e-17 93.2 181 37.0
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.2e-17 92.4 195 35.4
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 5.2e-17 92.4 141 39.0
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 5.2e-17 92.4 153 39.2
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 6.8e-17 92.0 194 36.6
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 8.8e-17 91.7 188 35.1
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 8.8e-17 91.7 145 40.7
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 1.2e-16 91.3 184 36.4
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-16 91.3 178 36.5
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.2e-16 91.3 178 36.5
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.2e-16 91.3 216 34.3
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 1.2e-16 91.3 143 41.3
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 1.5e-16 90.9 149 40.3
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 2.0e-16 90.5 178 36.0
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 2.0e-16 90.5 178 36.0
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 2.0e-16 90.5 141 40.4
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 2.6e-16 90.1 164 38.4
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 3.4e-16 89.7 193 36.3
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 3.4e-16 89.7 196 34.7
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 4.4e-16 89.4 215 34.9
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 4.4e-16 89.4 168 38.1
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 4.4e-16 89.4 142 40.8
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 4.4e-16 89.4 142 40.8
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 4.4e-16 89.4 144 39.6
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 4.4e-16 89.4 216 34.3
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 5.7e-16 89.0 142 40.8
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 5.7e-16 89.0 189 37.0
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 5.7e-16 89.0 206 34.0
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 5.7e-16 89.0 145 37.9
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 7.5e-16 88.6 184 35.9
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 7.5e-16 88.6 184 35.9
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 9.8e-16 88.2 178 38.8
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.3e-15 87.8 140 40.0
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.3e-15 87.8 184 35.9
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.3e-15 87.8 184 35.9
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.3e-15 87.8 204 32.8
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.3e-15 87.8 151 36.4
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 1.7e-15 87.4 209 34.9
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.7e-15 87.4 143 36.4
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 2.2e-15 87.0 151 38.4
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 2.2e-15 87.0 158 36.1
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 2.2e-15 87.0 183 35.5
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 2.8e-15 86.7 153 35.9
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 2.8e-15 86.7 155 38.1
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 2.8e-15 86.7 148 36.5
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 4.8e-15 85.9 151 35.8
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 4.8e-15 85.9 197 34.0
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 6.3e-15 85.5 206 33.0
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 8.3e-15 85.1 147 35.4
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.4e-14 84.3 145 37.2
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.8e-14 84.0 151 35.1
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.8e-14 84.0 142 38.7
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 2.4e-14 83.6 144 38.2
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.4e-14 83.6 145 39.3
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.4e-14 83.6 163 38.0
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 3.1e-14 83.2 141 36.2
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 3.1e-14 83.2 148 36.5
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 3.1e-14 83.2 149 34.9
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 3.1e-14 83.2 178 36.0
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 3.1e-14 83.2 212 34.0
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 4.1e-14 82.8 148 36.5
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 4.1e-14 82.8 149 36.9
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.1e-14 82.8 141 37.6
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 4.1e-14 82.8 144 37.5
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 5.4e-14 82.4 207 32.9
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 7.0e-14 82.0 126 39.7
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 7.0e-14 82.0 211 32.2
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 9.1e-14 81.6 148 37.2
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 1.2e-13 81.3 145 37.2
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 1.2e-13 81.3 148 37.8
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.6e-13 80.9 137 39.4
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 2.0e-13 80.5 169 34.3
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 2.7e-13 80.1 148 37.2
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 2.7e-13 80.1 141 36.9
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 3.5e-13 79.7 148 36.5
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 3.5e-13 79.7 148 36.5
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 4.5e-13 79.3 149 36.2
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 4.5e-13 79.3 146 36.3
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 5.9e-13 79.0 168 35.7
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 7.7e-13 78.6 185 32.4
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 7.7e-13 78.6 149 37.6
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 7.7e-13 78.6 148 36.5
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.0e-12 78.2 116 38.8
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.0e-12 78.2 152 34.2
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 1.0e-12 78.2 144 36.8
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.0e-12 78.2 143 37.1
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 1.0e-12 78.2 159 34.6
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 1.7e-12 77.4 144 37.5
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 2.9e-12 76.6 154 35.7
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 6.5e-12 75.5 165 30.9
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 1.5e-11 74.3 208 31.7
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 2.5e-11 73.6 200 34.5
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 1.2e-10 71.2 160 32.5
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 1.6e-10 70.9 168 33.9
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 4.7e-10 69.3 108 37.0
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.5e-08 64.3 93 43.0
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.5e-08 64.3 93 43.0
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.7e-08 62.4 139 34.5
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 9.8e-08 61.6 115 37.4
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 3.7e-07 59.7 128 35.2
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 6.3e-07 58.9 118 33.9


User provided reference genes

Program Settings