Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g011630 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 1.0e-130 470.3 280 100.0
Cre01.g013100 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 7.5e-57 224.9 163 63.8
Cre06.g278204 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 2.3e-45 186.8 176 52.8
Cre01.g011660 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 1.5e-41 174.1 182 50.0
Cre06.g278209 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 6.0e-30 135.6 183 40.4
Cre13.g589400 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 9.5e-28 128.3 171 44.4
Cre01.g049200 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D138700 1.3e-16 91.3 156 38.5
Cre06.g278160 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 8.1e-11 72.0 159 32.7
Cre06.g278158 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 1.1e-10 71.6 158 34.2
Sp7g31480 Schrenkiella parvula HOM05D000217 ORTHO05D000121 1.4e-10 71.2 135 34.8
Migut.N01119 Erythranthe guttata HOM05D000217 ORTHO05D000121 2.0e-09 67.4 154 33.1
SGA_v2.0_scaffold337G49183 Striga asiatica HOM05D000217 ORTHO05D000121 2.0e-09 67.4 146 32.2
Cfa024480 Carpinus fangiana HOM05D000217 ORTHO05D000121 5.8e-09 65.9 183 29.5
BcaNung04323 Brassica carinata HOM05D000217 ORTHO05D000121 7.6e-09 65.5 135 31.1
CiPaw.05G022800 Carya illinoinensis HOM05D000217 ORTHO05D000121 9.9e-09 65.1 123 34.1
Sabra09G0064200 Salix brachista HOM05D000217 ORTHO05D000121 9.9e-09 65.1 130 35.4
Potri.009G083000 Populus trichocarpa HOM05D000217 ORTHO05D000121 1.7e-08 64.3 151 30.5
BraA03t13656Z Brassica rapa HOM05D000217 ORTHO05D000121 2.9e-08 63.5 134 35.1
COL.COLO4_17808 Corchorus olitorius HOM05D000217 ORTHO05D000121 3.8e-08 63.2 149 31.5
Duzib132G0077 Durio zibethinus HOM05D000026 ORTHO05D000127 6.4e-08 62.4 143 30.1
Potri.009G083300 Populus trichocarpa HOM05D000217 ORTHO05D000121 6.4e-08 62.4 130 34.6
BcaC01g03095 Brassica carinata HOM05D000217 ORTHO05D000121 8.4e-08 62.0 170 32.4
C03p56070 Brassica napus HOM05D000217 ORTHO05D000121 8.4e-08 62.0 170 32.4
BolC3t17894H Brassica oleracea HOM05D000217 ORTHO05D000121 8.4e-08 62.0 170 32.4
BraA03t13657Z Brassica rapa HOM05D000217 ORTHO05D000121 8.4e-08 62.0 151 33.8
Cre01.g045000 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 8.4e-08 62.0 152 30.9
A03p45210 Brassica napus HOM05D000217 ORTHO05D000121 1.1e-07 61.6 134 34.3
CiPaw.05G022300 Carya illinoinensis HOM05D000217 ORTHO05D000121 1.1e-07 61.6 118 32.2
Lj6g0012085 Lotus japonicus HOM05D000217 ORTHO05D000121 1.1e-07 61.6 111 35.1
Mapoly0117s0024 Marchantia polymorpha HOM05D000217 ORTHO05D000121 1.1e-07 61.6 129 34.9
Potri.009G083100 Populus trichocarpa HOM05D000217 ORTHO05D000121 1.4e-07 61.2 130 33.1
Eucgr.G01171 Eucalyptus grandis HOM05D000217 ORTHO05D000121 1.9e-07 60.8 142 30.3
Gorai.008G044000 Gossypium raimondii HOM05D000217 ORTHO05D000121 1.9e-07 60.8 168 27.4
Mapoly0092s0055 Marchantia polymorpha HOM05D000217 ORTHO05D000121 2.4e-07 60.5 153 34.0
Os01g0382400 Oryza sativa ssp. japonica HOM05D000217 ORTHO05D000121 2.4e-07 60.5 157 28.7
Zm00001eb304940 Zea mays HOM05D000217 ORTHO05D000121 2.4e-07 60.5 171 35.7
CANSAT54G1919 Cannabis sativa HOM05D000217 ORTHO05D000121 3.2e-07 60.1 125 33.6
HPP92_018650 Vanilla planifolia HOM05D000217 ORTHO05D000121 3.2e-07 60.1 137 35.0
BcaB08g34558 Brassica carinata HOM05D000217 ORTHO05D000121 4.2e-07 59.7 134 33.6
CiPaw.05G022400 Carya illinoinensis HOM05D000217 ORTHO05D000121 4.2e-07 59.7 142 28.9
CiPaw.05G022500 Carya illinoinensis HOM05D000217 ORTHO05D000121 4.2e-07 59.7 142 28.9
Eucgr.D01554 Eucalyptus grandis HOM05D000217 ORTHO05D000121 4.2e-07 59.7 136 30.9
BcaC01g03094 Brassica carinata HOM05D000217 ORTHO05D000121 5.4e-07 59.3 148 31.1
C03p56080 Brassica napus HOM05D000217 ORTHO05D000121 5.4e-07 59.3 148 31.1
BolC3t17895H Brassica oleracea HOM05D000217 ORTHO05D000121 5.4e-07 59.3 148 31.1
Carub.0003s3422 Capsella rubella HOM05D000217 ORTHO05D000121 5.4e-07 59.3 111 34.2
Glyma.07G186200 Glycine max HOM05D000217 ORTHO05D000121 5.4e-07 59.3 104 38.5
Eucgr.D01552 Eucalyptus grandis HOM05D000217 ORTHO05D000121 7.1e-07 58.9 135 31.1
Eucgr.G01148 Eucalyptus grandis HOM05D000217 ORTHO05D000121 7.1e-07 58.9 142 29.6
AL3G39400 Arabidopsis lyrata HOM05D000217 ORTHO05D000121 9.3e-07 58.5 145 31.0
AL3G39420 Arabidopsis lyrata HOM05D000217 ORTHO05D000121 9.3e-07 58.5 146 32.2
AL3G39440 Arabidopsis lyrata HOM05D000217 ORTHO05D000121 9.3e-07 58.5 145 31.0
AL3G39510 Arabidopsis lyrata HOM05D000217 ORTHO05D000121 9.3e-07 58.5 145 31.0
arahy.Tifrunner.gnm1.ann1.0B8THM Arachis hypogaea HOM05D000217 ORTHO05D000121 9.3e-07 58.5 121 31.4
arahy.Tifrunner.gnm1.ann1.FW2V6H Arachis hypogaea HOM05D000217 ORTHO05D000121 9.3e-07 58.5 151 29.8
Gohir.D09G099000 Gossypium hirsutum HOM05D000217 ORTHO05D000121 9.3e-07 58.5 150 30.7
Zm00001eb299370 Zea mays HOM05D000217 ORTHO05D000121 9.3e-07 58.5 151 30.5
CDE07G1912 Ceratophyllum demersum HOM05D000217 ORTHO05D000121 1.2e-06 58.2 161 29.8
arahy.Tifrunner.gnm1.ann1.EJQI2R Arachis hypogaea HOM05D000217 ORTHO05D000121 1.6e-06 57.8 146 31.5
Cre02.g083100 Chlamydomonas reinhardtii HOM05D000217 ORTHO05D000121 1.6e-06 57.8 164 31.1
RcHm_v2.0_Chr6g0247381 Rosa chinensis HOM05D000217 ORTHO05D000121 1.6e-06 57.8 150 26.0
arahy.Tifrunner.gnm1.ann1.K279K0 Arachis hypogaea HOM05D000217 ORTHO05D000121 2.1e-06 57.4 146 30.8
A03p62170 Brassica napus HOM05D000217 ORTHO05D000121 2.1e-06 57.4 149 29.5
Nn5g27240 Nelumbo nucifera HOM05D000217 ORTHO05D000121 2.1e-06 57.4 126 31.7
Rhsim06G0210800 Rhododendron simsii HOM05D000217 ORTHO05D000121 2.1e-06 57.4 137 29.2
THA.LOC104820043 Tarenaya hassleriana HOM05D000217 ORTHO05D000121 2.1e-06 57.4 145 32.4
Zm00001eb299340 Zea mays HOM05D000217 ORTHO05D000121 2.1e-06 57.4 170 27.6
Nitab4.5_0004861g0030 Nicotiana tabacum HOM05D000217 ORTHO05D000121 2.7e-06 57.0 168 30.4
Sed0015791 Sechium edule HOM05D000217 ORTHO05D000121 2.7e-06 57.0 112 33.9
CDE07G0317 Ceratophyllum demersum HOM05D000217 ORTHO05D000121 3.5e-06 56.6 108 38.0
Eucgr.G01140 Eucalyptus grandis HOM05D000217 ORTHO05D000121 3.5e-06 56.6 135 30.4
FvH4_2g02921 Fragaria vesca HOM05D000217 ORTHO05D000121 3.5e-06 56.6 144 31.2
FAN24G3404 Fragaria x ananassa HOM05D000217 ORTHO05D000121 3.5e-06 56.6 144 31.2
Gorai.006G115900 Gossypium raimondii HOM05D000217 ORTHO05D000121 3.5e-06 56.6 150 30.0
MBI16_g05018_MAGBIO Magnolia biondii HOM05D000217 ORTHO05D000121 3.5e-06 56.6 129 31.8
PGR042G3603 Punica granatum HOM05D000217 ORTHO05D000121 3.5e-06 56.6 117 32.5
Cc02_g20290 Coffea canephora HOM05D000217 ORTHO05D000121 4.6e-06 56.2 144 30.6
Thhalv10002107m.g Eutrema salsugineum HOM05D000217 ORTHO05D000121 4.6e-06 56.2 111 34.2
Peaxi162Scf00009g00074 Petunia axillaris HOM05D000217 ORTHO05D000121 4.6e-06 56.2 147 32.7
Cpa.g.sc20.79 Carica papaya HOM05D000217 ORTHO05D000121 6.0e-06 55.8 98 39.8
FvH4_2g16860 Fragaria vesca HOM05D000217 ORTHO05D000121 6.0e-06 55.8 142 29.6
FAN24G2658 Fragaria x ananassa HOM05D000217 ORTHO05D000121 6.0e-06 55.8 142 29.6
HanXRQChr04g0101681 Helianthus annuus HOM05D000217 ORTHO05D000121 6.0e-06 55.8 135 31.9
PSO384G1858 Papaver somniferum HOM05D000217 ORTHO05D000121 6.0e-06 55.8 124 31.5
A03p62210 Brassica napus HOM05D000217 ORTHO05D000121 7.9e-06 55.5 149 28.9
BraA03t15256Z Brassica rapa HOM05D000217 ORTHO05D000121 7.9e-06 55.5 149 28.9
BraA03t15258Z Brassica rapa HOM05D000217 ORTHO05D000121 7.9e-06 55.5 149 28.9
CBR_g49657 Chara braunii HOM05D000217 ORTHO05D000121 7.9e-06 55.5 148 29.1
Haze_27509 Corylus avellana HOM05D000217 ORTHO05D000121 7.9e-06 55.5 96 36.5
Eucgr.D01560 Eucalyptus grandis HOM05D000217 ORTHO05D000121 7.9e-06 55.5 131 32.1
FAN07G0647 Fragaria x ananassa HOM05D000756 ORTHO05D000604 7.9e-06 55.5 142 29.6
FAN15G2007 Fragaria x ananassa HOM05D000217 ORTHO05D000121 7.9e-06 55.5 142 29.6
Gohir.A12G030800 Gossypium hirsutum HOM05D000217 ORTHO05D000121 7.9e-06 55.5 149 31.5
Nn5g27237 Nelumbo nucifera HOM05D000217 ORTHO05D000121 7.9e-06 55.5 126 31.0


User provided reference genes

Program Settings