Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g010500 Chlamydomonas reinhardtii HOM05D006191 ORTHO05D007660 2.0e-36 155.2 77 100.0
MCO15G227 Micromonas commoda HOM05D006191 ORTHO05D007660 1.3e-14 82.8 73 47.9
Carub.0003s0749 Capsella rubella HOM05D006191 ORTHO05D007660 4.8e-14 80.9 71 50.7
Sp3g06830 Schrenkiella parvula HOM05D006191 ORTHO05D007660 4.8e-14 80.9 70 51.4
CDE02G2705 Ceratophyllum demersum HOM05D006191 ORTHO05D007660 8.2e-14 80.1 69 50.7
Nn2g14883 Nelumbo nucifera HOM05D006191 ORTHO05D007660 8.2e-14 80.1 72 48.6
Nn7g36644 Nelumbo nucifera HOM05D000965 ORTHO05D000842 8.2e-14 80.1 72 48.6
Aqoxy2G00346 Aquilegia oxysepala HOM05D006191 ORTHO05D007660 1.1e-13 79.7 75 48.0
Prupe.4G268400 Prunus persica HOM05D006191 ORTHO05D007660 1.4e-13 79.3 72 48.6
BcaC05g29581 Brassica carinata HOM05D006191 ORTHO05D007660 1.8e-13 79.0 67 52.2
MD00G1126200 Malus domestica HOM05D006191 ORTHO05D007660 1.8e-13 79.0 70 50.0
MD00G1154200 Malus domestica HOM05D006191 ORTHO05D007660 1.8e-13 79.0 70 50.0
AUR62037186 Chenopodium quinoa HOM05D006191 ORTHO05D007660 2.4e-13 78.6 48 75.0
TPR.G8494 Trifolium pratense HOM05D006191 ORTHO05D007660 2.4e-13 78.6 69 50.7
BcaB04g21265 Brassica carinata HOM05D006191 ORTHO05D007660 3.1e-13 78.2 67 53.7
BolC5t34598H Brassica oleracea HOM05D006191 ORTHO05D007660 4.1e-13 77.8 70 48.6
Atru.chr12.1349 Acer truncatum HOM05D006191 ORTHO05D007660 5.3e-13 77.4 69 50.7
Atru.chr3.2798 Acer truncatum HOM05D006191 ORTHO05D007660 5.3e-13 77.4 70 47.1
C05p59410 Brassica napus HOM05D006191 ORTHO05D007660 5.3e-13 77.4 70 48.6
Ciclev10017371m.g Citrus clementina HOM05D006191 ORTHO05D007660 5.3e-13 77.4 70 48.6
Glyma.08G302200 Glycine max HOM05D006191 ORTHO05D007660 5.3e-13 77.4 69 49.3
Lj6g0026433 Lotus japonicus HOM05D006191 ORTHO05D007660 5.3e-13 77.4 69 49.3
PRCOL_00002293 Prasinoderma coloniale HOM05D006191 ORTHO05D007660 5.3e-13 77.4 72 47.2
COL.COLO4_04799 Corchorus olitorius HOM05D006191 ORTHO05D007660 6.9e-13 77.0 69 49.3
DCAR_002114 Daucus carota HOM05D006191 ORTHO05D007660 6.9e-13 77.0 72 47.2
Manes.01G180500 Manihot esculenta HOM05D006191 ORTHO05D007660 6.9e-13 77.0 69 49.3
Mapoly0046s0044 Marchantia polymorpha HOM05D006191 ORTHO05D007660 6.9e-13 77.0 67 49.3
Medtr3g434780 Medicago truncatula HOM05D006191 ORTHO05D007660 6.9e-13 77.0 69 49.3
PGR031G0246 Punica granatum HOM05D006191 ORTHO05D007660 6.9e-13 77.0 69 49.3
HPP92_025477 Vanilla planifolia HOM05D006191 ORTHO05D007660 6.9e-13 77.0 69 49.3
A05p40330 Brassica napus HOM05D006191 ORTHO05D007660 9.1e-13 76.6 70 47.1
MBI13_g01622_MAGBIO Magnolia biondii HOM05D006191 ORTHO05D007660 9.1e-13 76.6 69 49.3
Pp3c9_12820 Physcomitrium patens HOM05D006191 ORTHO05D007660 9.1e-13 76.6 73 41.1
ClCG02G022950 Citrullus lanatus HOM05D006191 ORTHO05D007660 1.2e-12 76.3 47 70.2
Duzib114G0719 Durio zibethinus HOM05D006191 ORTHO05D007660 1.2e-12 76.3 69 49.3
Oeu030629.1 Olea europaea HOM05D006191 ORTHO05D007660 1.2e-12 76.3 69 47.8
Pp3c15_6032 Physcomitrium patens HOM05D006191 ORTHO05D007660 1.2e-12 76.3 73 41.1
AagrBONN_evm.TU.Sc2ySwM_362.136 Anthoceros agrestis HOM05D006191 ORTHO05D007660 1.5e-12 75.9 69 44.9
A03p35550 Brassica napus HOM05D006191 ORTHO05D007660 1.5e-12 75.9 67 49.3
C03p43190 Brassica napus HOM05D006191 ORTHO05D007660 1.5e-12 75.9 67 49.3
BolC3t16588H Brassica oleracea HOM05D006191 ORTHO05D007660 1.5e-12 75.9 67 49.3
BraA03t12731Z Brassica rapa HOM05D006191 ORTHO05D007660 1.5e-12 75.9 67 49.3
MELO3C014567.2 Cucumis melo HOM05D006191 ORTHO05D007660 1.5e-12 75.9 69 49.3
CsaV3_6G039080 Cucumis sativus L. HOM05D006191 ORTHO05D007660 1.5e-12 75.9 69 49.3
Aa31LG5G18460 Aethionema arabicum HOM05D006191 ORTHO05D007660 2.0e-12 75.5 69 49.3
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 2.0e-12 75.5 46 69.6
Haze_23211 Corylus avellana HOM05D000001 ORTHO05D000003 2.0e-12 75.5 47 68.1
Lalb_Chr07g0183161 Lupinus albus HOM05D006191 ORTHO05D007660 2.0e-12 75.5 72 44.4
PSO339G4970 Papaver somniferum HOM05D006191 ORTHO05D007660 2.0e-12 75.5 67 50.7
PSO384G4772 Papaver somniferum HOM05D006191 ORTHO05D007660 2.0e-12 75.5 67 50.7
Sopen11g024870 Solanum pennellii HOM05D006191 ORTHO05D007660 2.0e-12 75.5 69 49.3
PGSC0003DMG400031241 Solanum tuberosum HOM05D006191 ORTHO05D007660 2.0e-12 75.5 69 49.3
Thecc.10G162100 Theobroma cacao HOM05D006191 ORTHO05D007660 2.0e-12 75.5 69 47.8
AT3G07910 Arabidopsis thaliana HOM05D006191 ORTHO05D007660 2.6e-12 75.1 72 48.6
CANSAT54G1797 Cannabis sativa HOM05D006191 ORTHO05D007660 2.6e-12 75.1 69 47.8
CARHR082640 Cardamine hirsuta HOM05D006191 ORTHO05D007660 2.6e-12 75.1 69 49.3
Thhalv10022475m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 2.6e-12 75.1 72 45.8
Glyma.18G117700 Glycine max HOM05D006191 ORTHO05D007660 2.6e-12 75.1 70 47.1
Oeu001494.1 Olea europaea HOM05D006191 ORTHO05D007660 2.6e-12 75.1 69 46.4
Sed0001199 Sechium edule HOM05D006191 ORTHO05D007660 2.6e-12 75.1 69 47.8
BcaC09g47957 Brassica carinata HOM05D006191 ORTHO05D007660 3.4e-12 74.7 70 47.1
BolC1t05519H Brassica oleracea HOM05D006191 ORTHO05D007660 3.4e-12 74.7 70 47.1
CSS0014439 Camellia sinensis var. sinensis HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
Duzib106G0217 Durio zibethinus HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
Duzib128G0357 Durio zibethinus HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
Migut.D00650 Erythranthe guttata HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 46.4
Eucgr.J01186 Eucalyptus grandis HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 44.9
Gohir.A10G183900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
Gohir.D10G191200 Gossypium hirsutum HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
Gohir.D13G004600 Gossypium hirsutum HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
Gorai.011G214000 Gossypium raimondii HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
Peaxi162Scf00004g04011 Petunia axillaris HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 49.3
Potri.001G277100 Populus trichocarpa HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 49.3
TWI38G0245 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
TWI63G0884 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
TAR623G0607 Trochodendron aralioides HOM05D006191 ORTHO05D007660 3.4e-12 74.7 69 47.8
Thhalv10021870m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 4.5e-12 74.3 72 45.8
Gorai.013G005000 Gossypium raimondii HOM05D006191 ORTHO05D007660 4.5e-12 74.3 69 47.8
Potri.009G071900 Populus trichocarpa HOM05D006191 ORTHO05D007660 4.5e-12 74.3 69 47.8
Sabra09G0054200 Salix brachista HOM05D006191 ORTHO05D007660 4.5e-12 74.3 69 47.8
GSVIVG01037255001 Vitis vinifera HOM05D006191 ORTHO05D007660 4.5e-12 74.3 69 46.4
ATR0745G066 Amborella trichopoda HOM05D006191 ORTHO05D007660 5.9e-12 73.9 70 47.1
CiPaw.14G114100 Carya illinoinensis HOM05D006191 ORTHO05D007660 5.9e-12 73.9 69 46.4
Dinv05064 Davidia involucrata HOM05D006191 ORTHO05D007660 5.9e-12 73.9 72 44.4
HanXRQChr06g0182571 Helianthus annuus HOM05D006191 ORTHO05D007660 5.9e-12 73.9 72 44.4
Lsat_1_v5_gn_2_33900 Lactuca sativa HOM05D006191 ORTHO05D007660 5.9e-12 73.9 69 47.8
Sc11g0006400 Simmondsia chinensis HOM05D006191 ORTHO05D007660 5.9e-12 73.9 69 47.8
THA.LOC104819131 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 5.9e-12 73.9 69 46.4
CAN.G484.24 Capsicum annuum HOM05D006191 ORTHO05D007660 7.7e-12 73.6 69 46.4
Hma1.2p1_0115F.1_g055930 Hydrangea macrophylla HOM05D006191 ORTHO05D007660 7.7e-12 73.6 69 44.9
Nitab4.5_0004018g0100 Nicotiana tabacum HOM05D006191 ORTHO05D007660 7.7e-12 73.6 72 44.4
Sopen12g034350 Solanum pennellii HOM05D006191 ORTHO05D007660 7.7e-12 73.6 69 46.4
ECA238G0093 Erigeron canadensis HOM05D006191 ORTHO05D007660 1.0e-11 73.2 67 47.8
Solyc11g150142.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 1.0e-11 73.2 70 45.7
CAN.G1850.1 Capsicum annuum HOM05D006191 ORTHO05D007660 1.3e-11 72.8 67 49.3
QL01p017491 Quercus lobata HOM05D006191 ORTHO05D007660 1.3e-11 72.8 69 46.4
SMO301G0059 Selaginella moellendorffii HOM05D006191 ORTHO05D007660 1.3e-11 72.8 67 43.3
Solyc12g099705.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 1.3e-11 72.8 69 46.4
BraA01t04352Z Brassica rapa HOM05D006191 ORTHO05D007660 1.7e-11 72.4 70 45.7
THA.LOC104825593 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 1.7e-11 72.4 69 44.9
Cpa.g.sc3.359 Carica papaya HOM05D006191 ORTHO05D007660 2.2e-11 72.0 69 44.9
Potri.003G197801 Populus trichocarpa HOM05D006191 ORTHO05D007660 2.2e-11 72.0 69 46.4
Potri.T125106 Populus trichocarpa HOM05D006191 ORTHO05D007660 2.2e-11 72.0 69 46.4
EL10Ac2g02816 Beta vulgaris HOM05D006191 ORTHO05D007660 2.9e-11 71.6 69 47.8
Zm00001eb432230 Zea mays HOM05D006191 ORTHO05D007660 5.0e-11 70.9 66 48.5
FvH4_3g28030 Fragaria vesca HOM05D006191 ORTHO05D007660 1.4e-10 69.3 72 41.7
FAN16G3748 Fragaria x ananassa HOM05D006191 ORTHO05D007660 1.4e-10 69.3 72 41.7
FAN21G2777 Fragaria x ananassa HOM05D006191 ORTHO05D007660 1.4e-10 69.3 72 41.7
FAN25G1591 Fragaria x ananassa HOM05D006191 ORTHO05D007660 1.4e-10 69.3 72 41.7
Cfa010050 Carpinus fangiana HOM05D000477 ORTHO05D000338 4.2e-10 67.8 46 60.9
Cc01_g05600 Coffea canephora HOM05D006191 ORTHO05D007660 7.2e-10 67.0 45 62.2
RcHm_v2.0_Chr5g0050711 Rosa chinensis HOM05D006191 ORTHO05D007660 9.4e-10 66.6 72 38.9
Actinidia23986 Actinidia chinensis HOM05D006191 ORTHO05D007660 1.2e-09 66.2 66 43.9
Sabra16G0171200 Salix brachista HOM05D006191 ORTHO05D007660 2.1e-09 65.5 72 44.4
Glyma.04G138500 Glycine max HOM05D006191 ORTHO05D007660 3.6e-09 64.7 42 66.7
TPR.G17809 Trifolium pratense HOM05D006191 ORTHO05D007660 4.6e-09 64.3 42 64.3
arahy.Tifrunner.gnm1.ann1.MB5P1Q Arachis hypogaea HOM05D006191 ORTHO05D007660 1.0e-08 63.2 42 64.3
Lalb_Chr04g0264081 Lupinus albus HOM05D006191 ORTHO05D007660 1.0e-08 63.2 42 64.3
Lalb_Chr25g0282111 Lupinus albus HOM05D006191 ORTHO05D007660 1.0e-08 63.2 42 64.3
Phvul.005G027500 Phaseolus vulgaris HOM05D006191 ORTHO05D007660 1.0e-08 63.2 42 64.3
Psat5g217760 Pisum sativum HOM05D006191 ORTHO05D007660 1.0e-08 63.2 42 64.3
Zm00001eb068350 Zea mays HOM05D006191 ORTHO05D007660 1.0e-08 63.2 59 49.2
arahy.Tifrunner.gnm1.ann1.HDQ2FX Arachis hypogaea HOM05D006191 ORTHO05D007660 1.4e-08 62.8 42 64.3
BcaC09g47961 Brassica carinata HOM05D006191 ORTHO05D007660 2.3e-08 62.0 64 43.8
Lj3g0010990 Lotus japonicus HOM05D006191 ORTHO05D007660 2.3e-08 62.0 42 64.3
Medtr3g017440 Medicago truncatula HOM05D006191 ORTHO05D007660 3.0e-08 61.6 42 61.9
Gohir.A13G004900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 8.8e-08 60.1 76 39.5
Rhsim01G0194500 Rhododendron simsii HOM05D000189 ORTHO05D000474 1.5e-07 59.3 38 65.8
FAN11G1162 Fragaria x ananassa HOM05D006191 ORTHO05D007660 6.3e-06 53.9 35 60.0


User provided reference genes

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