Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g010150 Chlamydomonas reinhardtii HOM05D002500 ORTHO05D002587 3.3e-287 991.5 665 100.0
SGA_v2.0_scaffold94G28489 Striga asiatica HOM05D002500 ORTHO05D002587 5.5e-16 90.5 280 28.6
Pp3c17_22310 Physcomitrium patens HOM05D002500 ORTHO05D002587 1.2e-15 89.4 219 32.4
FAN05G1296 Fragaria x ananassa HOM05D002500 ORTHO05D002587 1.0e-14 86.3 280 27.1
MD14G1074700 Malus domestica HOM05D002500 ORTHO05D002587 1.8e-14 85.5 280 27.5
RcHm_v2.0_Chr3g0482961 Rosa chinensis HOM05D002500 ORTHO05D002587 1.8e-14 85.5 280 27.1
FvH4_6g24210 Fragaria vesca HOM05D002500 ORTHO05D002587 2.3e-14 85.1 280 26.8
FAN14G3838 Fragaria x ananassa HOM05D002500 ORTHO05D002587 2.3e-14 85.1 280 26.8
PGSC0003DMG400023726 Solanum tuberosum HOM05D002500 ORTHO05D002587 4.0e-14 84.3 280 28.2
Rhsim03G0027600 Rhododendron simsii HOM05D002500 ORTHO05D002587 5.2e-14 84.0 280 28.2
Aa31LG1G23690 Aethionema arabicum HOM05D002500 ORTHO05D002587 8.9e-14 83.2 283 28.3
Eucgr.K01998 Eucalyptus grandis HOM05D002500 ORTHO05D002587 8.9e-14 83.2 280 28.2
Thhalv10016807m.g Eutrema salsugineum HOM05D002500 ORTHO05D002587 8.9e-14 83.2 283 28.3
Solyc10g080070.3 Solanum lycopersicum HOM05D002500 ORTHO05D002587 1.2e-13 82.8 280 27.9
Sopen10g030680 Solanum pennellii HOM05D002500 ORTHO05D002587 1.2e-13 82.8 280 27.9
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 1.5e-13 82.4 224 29.9
Eucgr.K02006 Eucalyptus grandis HOM05D002500 ORTHO05D002587 1.5e-13 82.4 280 28.2
Nitab4.5_0000364g0070 Nicotiana tabacum HOM05D002500 ORTHO05D002587 1.5e-13 82.4 280 27.5
Nitab4.5_0003307g0060 Nicotiana tabacum HOM05D002500 ORTHO05D002587 1.5e-13 82.4 280 28.2
Phvul.001G130500 Phaseolus vulgaris HOM05D002500 ORTHO05D002587 1.5e-13 82.4 280 27.5
Potri.006G048900 Populus trichocarpa HOM05D002500 ORTHO05D002587 1.5e-13 82.4 280 26.4
AT2G41670 Arabidopsis thaliana HOM05D002500 ORTHO05D002587 2.0e-13 82.0 280 28.9
CSS0018222 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 2.0e-13 82.0 280 26.8
CSS0038636 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 2.0e-13 82.0 280 26.8
MD12G1076600 Malus domestica HOM05D002500 ORTHO05D002587 2.0e-13 82.0 277 26.7
Sp4g23910 Schrenkiella parvula HOM05D002500 ORTHO05D002587 2.0e-13 82.0 283 28.3
AL4G39970 Arabidopsis lyrata HOM05D002500 ORTHO05D002587 2.6e-13 81.6 280 28.9
BcaC02g12789 Brassica carinata HOM05D002500 ORTHO05D002587 2.6e-13 81.6 283 28.3
A05p02400 Brassica napus HOM05D002500 ORTHO05D002587 2.6e-13 81.6 283 28.3
BolC4t21925H Brassica oleracea HOM05D002500 ORTHO05D002587 2.6e-13 81.6 283 28.3
BraA05t19234Z Brassica rapa HOM05D002500 ORTHO05D002587 2.6e-13 81.6 283 28.3
ECA247G3065 Erigeron canadensis HOM05D002500 ORTHO05D002587 2.6e-13 81.6 280 27.1
HanXRQChr01g0028391 Helianthus annuus HOM05D002500 ORTHO05D002587 2.6e-13 81.6 280 26.8
Peaxi162Scf00109g00129 Petunia axillaris HOM05D002500 ORTHO05D002587 2.6e-13 81.6 280 27.1
SHI12397 Sapria himalayana HOM05D002500 ORTHO05D002587 2.6e-13 81.6 280 27.1
C04p02850 Brassica napus HOM05D002500 ORTHO05D002587 3.4e-13 81.3 283 28.3
Dinv39622 Davidia involucrata HOM05D002500 ORTHO05D002587 3.4e-13 81.3 280 27.1
AagrBONN_evm.TU.Sc2ySwM_368.3358 Anthoceros agrestis HOM05D002500 ORTHO05D002587 4.4e-13 80.9 280 26.1
CARHR136750 Cardamine hirsuta HOM05D002500 ORTHO05D002587 4.4e-13 80.9 283 27.9
Migut.K00093 Erythranthe guttata HOM05D002500 ORTHO05D002587 4.4e-13 80.9 280 26.8
Lsat_1_v5_gn_9_30741 Lactuca sativa HOM05D002500 ORTHO05D002587 4.4e-13 80.9 280 26.8
Carub.0004s2394 Capsella rubella HOM05D002500 ORTHO05D002587 5.7e-13 80.5 280 28.6
CsaV3_4G011840 Cucumis sativus L. HOM05D001499 ORTHO05D001560 5.7e-13 80.5 280 26.1
Oeu008165.1 Olea europaea HOM05D002500 ORTHO05D002587 5.7e-13 80.5 280 27.5
SalBow6G2571 Salvia bowleyana HOM05D002500 ORTHO05D002587 5.7e-13 80.5 280 27.1
Sc19g0006570 Simmondsia chinensis HOM05D002500 ORTHO05D002587 5.7e-13 80.5 280 26.8
Lj1g0024295 Lotus japonicus HOM05D002500 ORTHO05D002587 7.5e-13 80.1 280 26.8
Aqoxy5G03596 Aquilegia oxysepala HOM05D002500 ORTHO05D002587 9.8e-13 79.7 280 26.1
Glyma.03G135000 Glycine max HOM05D002500 ORTHO05D002587 9.8e-13 79.7 280 27.1
HanXRQChr10g0300661 Helianthus annuus HOM05D002500 ORTHO05D002587 9.8e-13 79.7 280 26.4
Psat3g073200 Pisum sativum HOM05D002500 ORTHO05D002587 9.8e-13 79.7 280 26.8
SalBow7G1667 Salvia bowleyana HOM05D002500 ORTHO05D002587 1.3e-12 79.3 280 27.5
Ca_08442_v3 Cicer arietinum L. HOM05D002500 ORTHO05D002587 1.7e-12 79.0 280 26.4
SalBow6G5828 Salvia bowleyana HOM05D002500 ORTHO05D002587 1.7e-12 79.0 280 26.8
TAR369G1084 Trochodendron aralioides HOM05D002500 ORTHO05D002587 1.7e-12 79.0 280 26.4
Cpa.g.c32367 Carica papaya HOM05D002500 ORTHO05D002587 2.2e-12 78.6 279 27.2
Sabra06G0034200 Salix brachista HOM05D002500 ORTHO05D002587 2.2e-12 78.6 280 26.4
Eucgr.K01766 Eucalyptus grandis HOM05D002500 ORTHO05D002587 2.8e-12 78.2 219 30.6
Eucgr.K01761 Eucalyptus grandis HOM05D002500 ORTHO05D002587 3.7e-12 77.8 280 27.5
Glyma.19G137600 Glycine max HOM05D002500 ORTHO05D002587 3.7e-12 77.8 280 26.8
Lalb_Chr25g0287211 Lupinus albus HOM05D002500 ORTHO05D002587 3.7e-12 77.8 280 26.4
Medtr7g091320 Medicago truncatula HOM05D002500 ORTHO05D002587 3.7e-12 77.8 280 26.4
CiPaw.10G027900 Carya illinoinensis HOM05D002500 ORTHO05D002587 4.9e-12 77.4 280 26.8
MELO3C023106.2 Cucumis melo HOM05D002500 ORTHO05D002587 4.9e-12 77.4 279 25.4
Sed0010393 Sechium edule HOM05D002500 ORTHO05D002587 4.9e-12 77.4 283 25.8
VMungo1383G0256 Vigna mungo HOM05D002500 ORTHO05D002587 4.9e-12 77.4 283 27.6
CDE09G0898 Ceratophyllum demersum HOM05D002500 ORTHO05D002587 6.3e-12 77.0 280 26.4
Hma1.2p1_0788F.1_g218090 Hydrangea macrophylla HOM05D002500 ORTHO05D002587 8.3e-12 76.6 280 26.4
TWI77G0179 Tripterygium wilfordii HOM05D002500 ORTHO05D002587 8.3e-12 76.6 280 26.8
Atru.chr1.1133 Acer truncatum HOM05D002500 ORTHO05D002587 1.1e-11 76.3 280 26.8
PGR142G2008 Punica granatum HOM05D002500 ORTHO05D002587 1.4e-11 75.9 280 26.8
Zm00001eb047920 Zea mays HOM05D002500 ORTHO05D002587 1.4e-11 75.9 280 27.1
AL4G39820 Arabidopsis lyrata HOM05D002500 ORTHO05D002587 1.8e-11 75.5 283 27.9
GSVIVG01033255001 Vitis vinifera HOM05D002500 ORTHO05D002587 1.8e-11 75.5 280 26.8
Actinidia09314 Actinidia chinensis HOM05D002500 ORTHO05D002587 2.4e-11 75.1 280 26.8
Eucgr.K01980 Eucalyptus grandis HOM05D002500 ORTHO05D002587 2.4e-11 75.1 280 26.8
Manes.09G019500 Manihot esculenta HOM05D002500 ORTHO05D002587 2.4e-11 75.1 280 25.4
PSO261G0002 Papaver somniferum HOM05D002500 ORTHO05D002587 2.4e-11 75.1 282 27.0
PSO384G0869 Papaver somniferum HOM05D002500 ORTHO05D002587 2.4e-11 75.1 282 27.0
PSO384G1466 Papaver somniferum HOM05D002500 ORTHO05D002587 2.4e-11 75.1 282 27.0
vmacro07832 Vaccinium macrocarpon HOM05D002500 ORTHO05D002587 2.4e-11 75.1 280 26.8
vmacro23151 Vaccinium macrocarpon HOM05D002500 ORTHO05D002587 2.4e-11 75.1 280 26.8
HPP92_009905 Vanilla planifolia HOM05D002500 ORTHO05D002587 2.4e-11 75.1 280 26.1
Mapoly0026s0141 Marchantia polymorpha HOM05D002500 ORTHO05D002587 3.1e-11 74.7 219 28.8
Os11g0447300 Oryza sativa ssp. japonica HOM05D002500 ORTHO05D002587 3.1e-11 74.7 280 26.8
QL07p001548 Quercus lobata HOM05D002500 ORTHO05D002587 3.1e-11 74.7 282 28.0
DCAR_020498 Daucus carota HOM05D002500 ORTHO05D002587 4.1e-11 74.3 285 24.9
unitig_61.g26277 Utricularia gibba HOM05D002500 ORTHO05D002587 4.1e-11 74.3 280 27.1
ATR0782G096 Amborella trichopoda HOM05D002500 ORTHO05D002587 5.4e-11 73.9 280 25.7
Eucgr.K01722 Eucalyptus grandis HOM05D002500 ORTHO05D002587 9.2e-11 73.2 280 28.6
Gorai.002G226100 Gossypium raimondii HOM05D002500 ORTHO05D002587 9.2e-11 73.2 219 29.7
Gohir.A01G192700 Gossypium hirsutum HOM05D002500 ORTHO05D002587 1.2e-10 72.8 219 29.2
Eucgr.L01356 Eucalyptus grandis HOM05D002500 ORTHO05D002587 1.6e-10 72.4 280 26.4
Sopen04g008120 Solanum pennellii HOM05D002500 ORTHO05D002587 1.6e-10 72.4 280 25.4
Ah.04g151560 Amaranthus hybridus HOM05D002500 ORTHO05D002587 3.5e-10 71.2 280 26.8
ClCG04G003450 Citrullus lanatus HOM05D002500 ORTHO05D002587 3.5e-10 71.2 280 25.4
Gohir.D01G177100 Gossypium hirsutum HOM05D002500 ORTHO05D002587 5.9e-10 70.5 219 29.2
Peaxi162Scf00130g00422 Petunia axillaris HOM05D002500 ORTHO05D002587 5.9e-10 70.5 296 25.3
EL10Ac3g07104 Beta vulgaris HOM05D002500 ORTHO05D002587 7.8e-10 70.1 280 27.1
Cc06_g17680 Coffea canephora HOM05D002500 ORTHO05D002587 1.0e-09 69.7 280 26.1
Solyc04g016050.3 Solanum lycopersicum HOM05D002500 ORTHO05D002587 2.3e-09 68.6 277 24.5
Ciclev10005755m.g Citrus clementina HOM05D002500 ORTHO05D002587 2.9e-09 68.2 214 29.4
THA.LOC104804852 Tarenaya hassleriana HOM05D002500 ORTHO05D002587 5.0e-09 67.4 317 27.8
AUR62026057 Chenopodium quinoa HOM05D002500 ORTHO05D002587 6.6e-09 67.0 280 27.5
arahy.Tifrunner.gnm1.ann1.G31LB0 Arachis hypogaea HOM05D002500 ORTHO05D002587 8.6e-09 66.6 296 26.4
SMO164G0173 Selaginella moellendorffii HOM05D002500 ORTHO05D002587 8.6e-09 66.6 219 31.1
AUR62024466 Chenopodium quinoa HOM05D002500 ORTHO05D002587 1.5e-08 65.9 280 27.1
Lju124C44G2 Lonicera japonica HOM05D002500 ORTHO05D002587 1.5e-08 65.9 56 58.9
SalBow6G4165 Salvia bowleyana HOM05D002500 ORTHO05D002587 1.5e-08 65.9 213 30.5
Eucgr.K01783 Eucalyptus grandis HOM05D002500 ORTHO05D002587 3.3e-08 64.7 280 26.1
Thecc.05G149900 Theobroma cacao HOM05D002500 ORTHO05D002587 4.3e-08 64.3 280 25.4
arahy.Tifrunner.gnm1.ann1.P5C9KT Arachis hypogaea HOM05D002500 ORTHO05D002587 5.6e-08 63.9 298 25.8
CAN.G128.4 Capsicum annuum HOM05D002500 ORTHO05D002587 7.3e-08 63.5 55 58.2
Nn8g40639 Nelumbo nucifera HOM05D002500 ORTHO05D002587 7.3e-08 63.5 56 55.4
COL.COLO4_04893 Corchorus olitorius HOM05D002500 ORTHO05D002587 2.1e-07 62.0 277 24.5
Hund24695 Selenicereus undatus HOM05D002500 ORTHO05D002587 2.1e-07 62.0 56 55.4
MD12G1076200 Malus domestica HOM05D002500 ORTHO05D002587 8.0e-07 60.1 227 28.2
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 1.0e-06 59.7 55 56.4
CANSAT54G2161 Cannabis sativa HOM05D002500 ORTHO05D002587 2.3e-06 58.5 67 50.7
MSTRG.4975 Avicennia marina HOM05D002500 ORTHO05D002587 3.1e-06 58.2 286 25.5
CANSAT54G0655 Cannabis sativa HOM05D002500 ORTHO05D002587 3.1e-06 58.2 60 55.0
Dinv43561 Davidia involucrata HOM05D002500 ORTHO05D002587 4.0e-06 57.8 55 56.4
TAR636G0004 Trochodendron aralioides HOM05D002500 ORTHO05D002587 4.0e-06 57.8 60 48.3
Nitab4.5_0004725g0040 Nicotiana tabacum HOM05D002500 ORTHO05D002587 5.2e-06 57.4 55 56.4
SalBow7G1585 Salvia bowleyana HOM05D002500 ORTHO05D002587 5.2e-06 57.4 75 52.0
Peaxi162Scf00062g00615 Petunia axillaris HOM05D002500 ORTHO05D002587 8.9e-06 56.6 54 57.4
Prupe.7G056100 Prunus persica HOM05D002500 ORTHO05D002587 8.9e-06 56.6 122 30.3
RcHm_v2.0_Chr1g0341331 Rosa chinensis HOM05D002500 ORTHO05D002587 8.9e-06 56.6 55 52.7


User provided reference genes

Program Settings