Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 2.4e-227 792.0 440 100.0
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 7.2e-22 109.4 254 29.9
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 3.7e-18 97.1 168 31.5
Cre01.g008976 Chlamydomonas reinhardtii HOM05D007674 ORTHO05D140440 8.5e-07 59.3 25 96.0
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 1.1e-06 58.9 58 43.1
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.1e-06 58.9 58 41.4
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.5e-06 58.5 58 43.1
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.5e-06 58.5 77 36.4
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.5e-06 58.5 77 36.4
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.9e-06 58.2 58 41.4
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.5e-06 57.8 58 41.4
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 2.5e-06 57.8 58 41.4
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.5e-06 57.8 58 41.4
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.5e-06 57.8 58 39.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 2.5e-06 57.8 58 41.4
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 3.2e-06 57.4 95 33.7
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 3.2e-06 57.4 58 41.4
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 4.2e-06 57.0 58 41.4
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 4.2e-06 57.0 58 41.4
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.2e-06 57.0 58 39.7
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 4.2e-06 57.0 58 39.7
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 5.5e-06 56.6 62 40.3
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 5.5e-06 56.6 92 33.7
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 5.5e-06 56.6 91 33.0
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 41.4
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 5.5e-06 56.6 56 42.9
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.5e-06 56.6 97 34.0
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 5.5e-06 56.6 58 39.7
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 7.2e-06 56.2 95 32.6
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 7.2e-06 56.2 58 39.7
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 7.2e-06 56.2 58 39.7
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 7.2e-06 56.2 58 39.7
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 7.2e-06 56.2 58 39.7
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 7.2e-06 56.2 58 41.4
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 7.2e-06 56.2 58 39.7
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 7.2e-06 56.2 58 39.7
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 7.2e-06 56.2 58 39.7
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 39.7
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 39.7
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 9.4e-06 55.8 91 33.0
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 39.7
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 39.7
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 37.9
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 39.7
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 39.7
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 39.7
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 39.7
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 9.4e-06 55.8 58 39.7


User provided reference genes

Program Settings