Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g008150 Chlamydomonas reinhardtii HOM05D002989 ORTHO05D003218 0.0e+00 2837.4 2235 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2433 Anthoceros agrestis HOM05D002989 ORTHO05D003218 2.1e-53 216.5 487 32.6
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 8.1e-53 214.5 563 29.7
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 1.7e-50 206.8 560 29.1
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 2.9e-50 206.1 561 29.8
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 3.7e-50 205.7 488 30.7
Pp3c16_17820 Physcomitrium patens HOM05D002989 ORTHO05D003218 4.9e-50 205.3 494 31.6
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 2.4e-49 203.0 571 29.1
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 3.2e-49 202.6 561 28.7
Mapoly0019s0132 Marchantia polymorpha HOM05D002989 ORTHO05D003218 7.1e-49 201.4 494 32.2
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 9.2e-49 201.1 570 28.8
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 2.7e-48 199.5 562 28.8
Peaxi162Scf00230g00019 Petunia axillaris HOM05D002989 ORTHO05D003218 2.7e-48 199.5 521 29.9
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 3.5e-48 199.1 500 28.6
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 2.3e-47 196.4 563 29.8
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 3.9e-47 195.7 562 28.6
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 5.1e-47 195.3 569 28.3
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 5.1e-47 195.3 582 28.2
Psat6g059080 Pisum sativum HOM05D002989 ORTHO05D003218 8.6e-47 194.5 577 27.7
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 1.1e-46 194.1 510 30.6
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 1.5e-46 193.7 584 28.3
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 4.3e-46 192.2 594 28.1
Solyc09g065650.3 Solanum lycopersicum HOM05D002989 ORTHO05D003218 7.3e-46 191.4 499 29.5
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 1.2e-45 190.7 581 28.2
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 1.6e-45 190.3 590 26.1
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 1.6e-45 190.3 568 28.3
Sc17g0001200 Simmondsia chinensis HOM05D002989 ORTHO05D003218 1.6e-45 190.3 582 28.0
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 1.6e-45 190.3 594 27.1
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 2.8e-45 189.5 571 27.8
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 3.6e-45 189.1 568 28.2
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 3.6e-45 189.1 504 28.6
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 3.6e-45 189.1 499 29.5
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 4.7e-45 188.7 580 27.9
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 6.2e-45 188.3 521 29.4
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 8.1e-45 188.0 567 26.8
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 8.1e-45 188.0 583 29.3
Gohir.D08G055500 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.1e-44 187.6 582 27.0
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 1.1e-44 187.6 499 29.5
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 1.4e-44 187.2 582 27.0
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 3.1e-44 186.0 599 27.4
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 4.0e-44 185.7 493 29.6
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 4.0e-44 185.7 522 29.1
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 6.8e-44 184.9 570 27.9
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 6.8e-44 184.9 597 27.1
SMO238G0016 Selaginella moellendorffii HOM05D002989 ORTHO05D003218 6.8e-44 184.9 304 37.2
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 8.9e-44 184.5 596 27.3
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 1.2e-43 184.1 307 37.1
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 1.5e-43 183.7 310 38.4
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 1.5e-43 183.7 516 28.3
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 1.5e-43 183.7 514 28.8
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 1.5e-43 183.7 511 28.0
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 2.0e-43 183.3 500 30.4
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 2.6e-43 183.0 486 28.6
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 2.6e-43 183.0 582 26.6
Dinv32887 Davidia involucrata HOM05D002989 ORTHO05D003218 5.8e-43 181.8 586 26.8
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 7.6e-43 181.4 539 27.5
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 1.7e-42 180.3 564 28.4
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 1.7e-42 180.3 555 27.2
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 6.4e-42 178.3 495 29.1
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 1.1e-41 177.6 566 28.1
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 1.4e-41 177.2 588 26.4
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 3.2e-41 176.0 577 27.6
TPR.G25694 Trifolium pratense HOM05D002989 ORTHO05D003218 3.2e-41 176.0 377 32.6
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 1.2e-40 174.1 579 26.1
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 4.6e-40 172.2 486 28.4
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 6.0e-40 171.8 571 26.8
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 1.0e-39 171.0 495 29.3
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 1.7e-39 170.2 566 26.7
Aa31LG10G17180 Aethionema arabicum HOM05D002989 ORTHO05D003218 5.1e-39 168.7 481 27.7
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 6.6e-39 168.3 576 27.3
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 8.7e-39 167.9 554 27.6
Eucgr.K03327 Eucalyptus grandis HOM05D002989 ORTHO05D003218 1.6e-37 163.7 545 27.3
AUR62011976 Chenopodium quinoa HOM05D002989 ORTHO05D003218 2.8e-37 162.9 577 27.2
unitig_0.g139 Utricularia gibba HOM05D002989 ORTHO05D003218 3.6e-37 162.5 280 36.4
PRCOL_00004918 Prasinoderma coloniale HOM05D002989 ORTHO05D003218 3.1e-36 159.5 444 31.1
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 4.0e-36 159.1 587 26.1
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 4.0e-36 159.1 479 26.7
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 9.9e-35 154.5 455 27.7
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.3e-34 154.1 601 25.6
CBR_g2972 Chara braunii HOM05D002989 ORTHO05D003218 1.7e-34 153.7 308 35.1
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.7e-34 153.7 601 25.6
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 8.4e-34 151.4 524 26.9
Haze_04647 Corylus avellana HOM05D002989 ORTHO05D003218 1.4e-33 150.6 481 28.9
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 1.9e-33 150.2 566 25.3
CDE05G0153 Ceratophyllum demersum HOM05D002989 ORTHO05D003218 7.1e-33 148.3 516 26.0
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 9.3e-33 147.9 442 26.9
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 1.2e-32 147.5 434 26.5
HPP92_020348 Vanilla planifolia HOM05D002989 ORTHO05D003218 1.3e-31 144.1 500 26.0
CSS0037859 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 5.1e-31 142.1 198 41.9
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 1.3e-29 137.5 594 24.6
VMungo0720G0909 Vigna mungo HOM05D000002 ORTHO05D000001 2.1e-29 136.7 393 28.0
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 4.8e-29 135.6 475 24.8
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 9.9e-27 127.9 485 25.8
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 1.7e-26 127.1 579 25.0
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 3.8e-26 125.9 484 25.0
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 4.6e-24 119.0 278 31.7
Zm00001eb114510 Zea mays HOM05D002989 ORTHO05D003218 4.6e-24 119.0 184 40.2
Zm00001eb114650 Zea mays HOM05D002989 ORTHO05D003218 7.4e-22 111.7 170 41.2
QL05p073824 Quercus lobata HOM05D002989 ORTHO05D003218 2.2e-18 100.1 298 27.2
Zm00001eb114680 Zea mays HOM05D002989 ORTHO05D003218 4.3e-14 85.9 141 40.4
Rhsim01G0068300 Rhododendron simsii HOM05D002989 ORTHO05D003218 1.6e-13 84.0 152 33.6
TWI60G1634 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 6.3e-13 82.0 234 28.2
Zm00001eb114500 Zea mays HOM05D002989 ORTHO05D003218 1.4e-12 80.9 132 38.6
Peaxi162Scf00732g00137 Petunia axillaris HOM05D002989 ORTHO05D003218 2.5e-09 70.1 167 33.5
SEGI_21440 Sequoiadendron giganteum HOM05D002989 ORTHO05D003218 1.0e-07 64.7 53 50.9
AL1G52600 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 2.5e-06 60.1 87 35.6


User provided reference genes

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