Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.3e-264 914.4 449 100.0
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 6.0e-141 505.0 399 61.4
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.3e-129 465.3 398 57.8
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.9e-127 458.8 398 56.8
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 9.3e-126 454.5 399 56.4
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 9.6e-123 444.5 398 55.3
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.4e-120 436.0 399 53.9
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.8e-120 435.3 395 53.9
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.3e-119 434.1 395 55.4
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.7e-119 433.7 395 54.7
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 2.9e-119 433.0 398 55.0
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.1e-118 431.0 395 53.9
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 2.5e-118 429.9 395 54.9
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 3.2e-118 429.5 395 54.9
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 4.2e-118 429.1 395 54.7
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 4.2e-118 429.1 395 55.2
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 4.2e-118 429.1 395 54.9
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 9.3e-118 427.9 395 54.4
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 9.3e-118 427.9 395 54.2
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 9.3e-118 427.9 395 54.7
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.2e-117 427.6 395 53.4
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.2e-117 427.6 395 54.4
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.2e-117 427.6 395 54.7
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.6e-117 427.2 395 54.7
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.6e-117 427.2 395 54.4
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.6e-117 427.2 399 55.4
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.6e-117 427.2 395 54.7
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.1e-117 426.8 395 54.2
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 2.7e-117 426.4 394 53.8
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 2.7e-117 426.4 395 53.7
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 3.5e-117 426.0 395 53.2
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 3.5e-117 426.0 418 51.4
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 3.5e-117 426.0 395 54.7
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 4.6e-117 425.6 395 54.2
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 4.6e-117 425.6 395 54.2
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 6.0e-117 425.2 395 53.7
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 7.9e-117 424.9 395 53.7
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 7.9e-117 424.9 395 54.2
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 1.0e-116 424.5 395 53.7
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 1.0e-116 424.5 395 54.4
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.3e-116 424.1 395 53.7
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.3e-116 424.1 395 53.9
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.3e-116 424.1 395 53.4
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.8e-116 423.7 395 53.2
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.8e-116 423.7 395 53.4
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.8e-116 423.7 395 54.4
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.8e-116 423.7 399 53.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.8e-116 423.7 395 53.9
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.8e-116 423.7 395 54.2
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 2.3e-116 423.3 395 54.7
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.3e-116 423.3 395 54.7
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 3.0e-116 422.9 395 53.2
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.0e-116 422.9 395 54.4
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 3.0e-116 422.9 395 54.4
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 3.9e-116 422.5 395 53.2
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 3.9e-116 422.5 395 53.2
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 5.1e-116 422.2 395 53.7
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 5.1e-116 422.2 395 53.7
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.1e-116 422.2 395 53.9
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 5.1e-116 422.2 395 53.9
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 6.7e-116 421.8 395 53.9
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 6.7e-116 421.8 395 53.7
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.7e-116 421.8 395 54.4
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.7e-116 421.8 395 54.2
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 6.7e-116 421.8 395 54.4
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 6.7e-116 421.8 395 54.4
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 6.7e-116 421.8 395 52.7
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 8.7e-116 421.4 395 53.9
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 8.7e-116 421.4 395 53.4
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.1e-115 421.0 395 52.9
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.1e-115 421.0 395 54.2
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.1e-115 421.0 395 52.9
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.1e-115 421.0 396 53.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.5e-115 420.6 395 53.4
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.5e-115 420.6 395 53.9
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.9e-115 420.2 395 53.9
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.9e-115 420.2 395 54.4
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.9e-115 420.2 395 53.7
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 1.9e-115 420.2 395 53.9
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.5e-115 419.9 398 52.8
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.3e-115 419.5 395 53.4
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 3.3e-115 419.5 395 53.4
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 3.3e-115 419.5 395 53.4
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 4.3e-115 419.1 404 53.5
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 4.3e-115 419.1 395 53.9
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 4.3e-115 419.1 395 52.4
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 5.7e-115 418.7 395 53.7
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 5.7e-115 418.7 395 53.4
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 5.7e-115 418.7 395 53.2
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 7.4e-115 418.3 395 52.9
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 7.4e-115 418.3 395 53.2
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 9.7e-115 417.9 395 53.2
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 9.7e-115 417.9 395 53.7
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 9.7e-115 417.9 395 52.7
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 9.7e-115 417.9 395 52.7
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.3e-114 417.5 410 52.7
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 2.2e-114 416.8 395 53.2
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 2.2e-114 416.8 384 54.4
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 2.2e-114 416.8 384 54.4
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 2.2e-114 416.8 395 53.2
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 2.2e-114 416.8 395 53.2
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 2.2e-114 416.8 384 54.4
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.2e-114 416.8 399 52.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.2e-114 416.8 384 54.2
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 2.2e-114 416.8 413 51.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 2.8e-114 416.4 384 54.4
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 2.8e-114 416.4 384 54.4
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.8e-114 416.4 395 53.2
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.8e-114 416.4 395 53.4
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 2.8e-114 416.4 384 53.9
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 3.7e-114 416.0 395 53.4
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 3.7e-114 416.0 395 52.7
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 3.7e-114 416.0 398 52.0
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 4.8e-114 415.6 395 52.9
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 4.8e-114 415.6 395 52.9
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 6.3e-114 415.2 413 51.3
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 8.2e-114 414.8 384 53.6
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.1e-113 414.5 384 54.4
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.4e-113 413.3 384 53.6
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 3.1e-113 412.9 395 52.2
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 5.3e-113 412.1 395 52.4
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.2e-112 411.0 431 50.3
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.5e-112 410.6 384 53.4
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 2.0e-112 410.2 395 52.2
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 1.9e-110 403.7 395 50.4
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 2.5e-110 403.3 394 51.0
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.5e-110 403.3 398 51.3
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 2.1e-109 400.2 395 51.9
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.7e-109 399.8 395 51.6
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 3.6e-109 399.4 422 49.1
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 6.1e-109 398.7 366 53.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 6.7e-108 395.2 352 55.7
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.0e-107 393.7 395 50.6
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 2.5e-107 393.3 412 49.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 5.3e-105 385.6 434 47.5
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 9.1e-105 384.8 426 48.4
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 1.0e-103 381.3 357 54.1
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 2.2e-103 380.2 395 50.4
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.4e-100 370.9 374 49.7
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 3.3e-99 366.3 339 54.3
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 5.9e-96 355.5 333 53.8
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 1.5e-91 340.9 395 46.8
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 1.5e-86 324.3 395 46.1
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 5.7e-83 312.4 329 49.8
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 3.6e-77 293.1 395 43.3
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 8.6e-71 271.9 258 53.1
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 7.2e-70 268.9 411 40.6
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.2e-69 268.1 395 40.5
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.5e-67 261.2 229 57.2
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 4.1e-65 253.1 274 48.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 2.0e-59 234.2 213 54.9
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 5.8e-59 232.6 212 53.8
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 4.9e-58 229.6 213 53.5
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.6e-51 207.2 285 42.8
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.9e-42 177.2 154 53.2
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.6e-37 160.2 407 31.2
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.3e-34 151.8 154 49.4
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 6.4e-34 149.4 350 25.7
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 6.0e-24 116.3 113 50.4
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-21 107.8 378 25.9
Pp3s34_610 Physcomitrium patens HOM05D000068 ORTHO05D011688 2.3e-15 87.8 305 25.2
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 5.1e-15 86.7 70 54.3
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 6.2e-13 79.7 301 23.9


User provided reference genes

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