Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 0.0e+00 3481.8 3140 100.0
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 2.2e-11 77.4 388 22.4
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 2.8e-11 77.0 374 23.5
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 6.3e-11 75.9 379 24.3
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 8.2e-11 75.5 376 24.2
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 1.1e-10 75.1 387 22.2
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 1.4e-10 74.7 388 21.9
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 1.4e-10 74.7 388 21.9
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 1.4e-10 74.7 388 21.9
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.8e-10 74.3 379 23.7
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 3.1e-10 73.6 374 21.9
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 4.1e-10 73.2 376 23.7
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 5.3e-10 72.8 384 22.4
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 7.0e-10 72.4 388 22.4
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 1.2e-09 71.6 388 21.6
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 1.2e-09 71.6 388 22.7
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 1.6e-09 71.2 388 21.9
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.6e-09 71.2 107 37.4
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 2.0e-09 70.9 379 23.2
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 2.0e-09 70.9 386 20.7
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 3.5e-09 70.1 376 22.3
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 4.5e-09 69.7 107 35.5
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 4.5e-09 69.7 381 22.8
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 4.5e-09 69.7 378 22.2
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 4.5e-09 69.7 385 22.3
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 4.5e-09 69.7 107 36.4
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 5.9e-09 69.3 415 22.7
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 5.9e-09 69.3 385 20.8
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 5.9e-09 69.3 379 21.6
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 1.0e-08 68.6 379 23.0
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 1.0e-08 68.6 379 23.0
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 1.0e-08 68.6 379 23.0
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 1.0e-08 68.6 379 23.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 1.0e-08 68.6 387 22.7
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 1.0e-08 68.6 376 22.9
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 1.0e-08 68.6 393 22.1
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 1.3e-08 68.2 379 22.7
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 1.3e-08 68.2 400 22.2
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 1.3e-08 68.2 99 37.4
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 1.7e-08 67.8 376 21.8
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 1.7e-08 67.8 386 22.0
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 1.7e-08 67.8 386 21.8
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.7e-08 67.8 107 34.6
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 2.2e-08 67.4 376 23.4
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 2.2e-08 67.4 107 33.6
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 2.2e-08 67.4 368 23.1
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 2.9e-08 67.0 378 21.7
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 2.9e-08 67.0 379 22.7
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 2.9e-08 67.0 379 22.2
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 3.8e-08 66.6 381 23.1
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 3.8e-08 66.6 381 23.1
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 3.8e-08 66.6 382 23.0
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 3.8e-08 66.6 108 35.2
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 3.8e-08 66.6 388 23.5
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 5.0e-08 66.2 387 21.4
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 5.0e-08 66.2 99 36.4
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 6.5e-08 65.9 387 21.4
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 6.5e-08 65.9 390 20.8
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 6.5e-08 65.9 99 35.4
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 8.5e-08 65.5 99 35.4
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 8.5e-08 65.5 379 22.2
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 8.5e-08 65.5 376 21.8
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 8.5e-08 65.5 107 34.6
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-07 65.1 107 34.6
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 1.1e-07 65.1 110 34.5
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 1.5e-07 64.7 382 23.0
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 1.5e-07 64.7 379 21.6
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 1.5e-07 64.7 107 33.6
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 1.9e-07 64.3 379 21.9
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 1.9e-07 64.3 107 33.6
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 1.9e-07 64.3 374 21.9
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 1.9e-07 64.3 366 22.4
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.2e-07 63.5 387 21.4
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 3.2e-07 63.5 387 21.4
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 3.2e-07 63.5 379 21.9
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 3.2e-07 63.5 99 36.4
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.2e-07 63.2 384 20.8
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 5.5e-07 62.8 374 21.7
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 5.5e-07 62.8 381 22.8
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 5.5e-07 62.8 381 21.5
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 5.5e-07 62.8 388 22.2
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 7.2e-07 62.4 400 22.2
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 7.2e-07 62.4 374 21.7
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.2e-07 62.4 378 21.7
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 9.4e-07 62.0 379 21.4
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 9.4e-07 62.0 383 21.1
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 1.2e-06 61.6 386 22.0
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 1.2e-06 61.6 373 21.2
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 1.2e-06 61.6 373 21.2
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 2.1e-06 60.8 379 21.4
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 2.1e-06 60.8 374 22.7
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 2.1e-06 60.8 374 22.7
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 2.1e-06 60.8 374 22.7
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 2.1e-06 60.8 374 22.7
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 2.7e-06 60.5 366 21.0
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 2.7e-06 60.5 374 22.7
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 2.7e-06 60.5 379 22.2
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 3.6e-06 60.1 394 20.6
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 3.6e-06 60.1 380 21.8
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 3.6e-06 60.1 371 21.3
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 4.7e-06 59.7 123 34.1
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 6.1e-06 59.3 339 22.4
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 6.1e-06 59.3 339 22.4
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 8.0e-06 58.9 378 21.4
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 8.0e-06 58.9 378 21.4
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 8.0e-06 58.9 378 21.4


User provided reference genes

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