Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g002451 Chlamydomonas reinhardtii HOM05D004599 ORTHO05D005564 1.2e-170 603.2 340 100.0
MCO03G582 Micromonas commoda HOM05D004599 ORTHO05D005564 8.9e-20 102.1 203 38.4
Zm00001eb426320 Zea mays HOM05D004599 ORTHO05D005564 2.4e-17 94.0 181 33.1
MELO3C022936.2 Cucumis melo HOM05D004599 ORTHO05D005564 3.2e-17 93.6 173 32.4
CsaV3_5G015660 Cucumis sativus L. HOM05D004599 ORTHO05D005564 5.4e-17 92.8 177 32.2
Os04g0509100 Oryza sativa ssp. japonica HOM05D004599 ORTHO05D005564 1.6e-16 91.3 243 32.9
AUR62035344 Chenopodium quinoa HOM05D004599 ORTHO05D005564 2.7e-16 90.5 181 31.5
Ciclev10004289m.g Citrus clementina HOM05D004599 ORTHO05D005564 2.7e-16 90.5 177 31.6
Nn1g03051 Nelumbo nucifera HOM05D004599 ORTHO05D005564 2.7e-16 90.5 183 32.8
RcHm_v2.0_Chr4g0396161 Rosa chinensis HOM05D004599 ORTHO05D005564 2.7e-16 90.5 192 31.8
CiPaw.01G175100 Carya illinoinensis HOM05D004599 ORTHO05D005564 3.5e-16 90.1 181 30.4
ClCG11G000260 Citrullus lanatus HOM05D004599 ORTHO05D005564 7.8e-16 89.0 173 31.2
TWI09G0954 Tripterygium wilfordii HOM05D004599 ORTHO05D005564 7.8e-16 89.0 181 31.5
Pp3c16_6180 Physcomitrium patens HOM05D004599 ORTHO05D005564 1.0e-15 88.6 220 30.5
PGR004G1602 Punica granatum HOM05D004599 ORTHO05D005564 1.0e-15 88.6 186 31.2
Atru.chr4.1870 Acer truncatum HOM05D004599 ORTHO05D005564 1.3e-15 88.2 181 30.4
FvH4_4g05250 Fragaria vesca HOM05D004599 ORTHO05D005564 1.3e-15 88.2 173 33.5
FAN07G1323 Fragaria x ananassa HOM05D004599 ORTHO05D005564 1.3e-15 88.2 173 33.5
FAN12G1799 Fragaria x ananassa HOM05D004599 ORTHO05D005564 1.3e-15 88.2 173 33.5
FAN17G0126 Fragaria x ananassa HOM05D004599 ORTHO05D005564 1.7e-15 87.8 173 33.5
Mapoly0081s0062 Marchantia polymorpha HOM05D004599 ORTHO05D005564 1.7e-15 87.8 179 33.0
FAN22G0163 Fragaria x ananassa HOM05D004599 ORTHO05D005564 2.3e-15 87.4 173 32.9
MD13G1226600 Malus domestica HOM05D004599 ORTHO05D005564 2.3e-15 87.4 183 31.7
PSO832G1760 Papaver somniferum HOM05D004599 ORTHO05D005564 3.0e-15 87.0 181 30.9
Glyma.10G130800 Glycine max HOM05D004599 ORTHO05D005564 3.9e-15 86.7 181 30.4
AT4G13550 Arabidopsis thaliana HOM05D004599 ORTHO05D005564 5.0e-15 86.3 181 29.3
Cfa014829 Carpinus fangiana HOM05D004599 ORTHO05D005564 6.6e-15 85.9 181 29.3
Sc19g0005730 Simmondsia chinensis HOM05D004599 ORTHO05D005564 8.6e-15 85.5 181 30.9
AL7G43140 Arabidopsis lyrata HOM05D004599 ORTHO05D005564 1.1e-14 85.1 181 29.3
Glyma.20G081500 Glycine max HOM05D004599 ORTHO05D005564 1.9e-14 84.3 181 29.8
Cc03_g06960 Coffea canephora HOM05D004599 ORTHO05D005564 2.5e-14 84.0 210 29.0
Hund19266 Selenicereus undatus HOM05D004599 ORTHO05D005564 2.5e-14 84.0 187 30.5
Hma1.2p1_1076F.1_g254540 Hydrangea macrophylla HOM05D004599 ORTHO05D005564 3.3e-14 83.6 183 30.1
BcaB03g16085 Brassica carinata HOM05D004599 ORTHO05D005564 4.3e-14 83.2 189 29.1
Carub.0007s2899 Capsella rubella HOM05D004599 ORTHO05D005564 4.3e-14 83.2 181 28.7
Prupe.1G054000 Prunus persica HOM05D004599 ORTHO05D005564 4.3e-14 83.2 227 29.5
Actinidia35930 Actinidia chinensis HOM05D004599 ORTHO05D005564 7.3e-14 82.4 188 29.3
Aqoxy5G00088 Aquilegia oxysepala HOM05D004599 ORTHO05D005564 9.5e-14 82.0 210 28.6
CANSAT78G2223 Cannabis sativa HOM05D004599 ORTHO05D005564 9.5e-14 82.0 181 29.3
Duzib212G0332 Durio zibethinus HOM05D004599 ORTHO05D005564 9.5e-14 82.0 181 28.2
arahy.Tifrunner.gnm1.ann1.7X6UW5 Arachis hypogaea HOM05D004599 ORTHO05D005564 1.2e-13 81.6 208 29.3
Lsat_1_v5_gn_6_67861 Lactuca sativa HOM05D004599 ORTHO05D005564 1.2e-13 81.6 177 28.8
Psat0s2340g0040 Pisum sativum HOM05D004599 ORTHO05D005564 1.2e-13 81.6 181 30.4
ECA233G3541 Erigeron canadensis HOM05D004599 ORTHO05D005564 1.6e-13 81.3 177 29.9
HanXRQChr07g0185811 Helianthus annuus HOM05D004599 ORTHO05D005564 1.6e-13 81.3 182 30.2
Manes.03G155700 Manihot esculenta HOM05D004599 ORTHO05D005564 1.6e-13 81.3 181 28.7
DCAR_024304 Daucus carota HOM05D004599 ORTHO05D005564 2.1e-13 80.9 163 30.1
Gohir.A02G025500 Gossypium hirsutum HOM05D004599 ORTHO05D005564 2.1e-13 80.9 181 29.3
MBI07_g14440_MAGBIO Magnolia biondii HOM05D004599 ORTHO05D005564 2.8e-13 80.5 181 29.8
Medtr1g045930 Medicago truncatula HOM05D004599 ORTHO05D005564 2.8e-13 80.5 181 29.8
Sp7g11150 Schrenkiella parvula HOM05D004599 ORTHO05D005564 2.8e-13 80.5 255 26.7
BcaC02g09417 Brassica carinata HOM05D004599 ORTHO05D005564 3.6e-13 80.1 181 28.7
Migut.O00257 Erythranthe guttata HOM05D004599 ORTHO05D005564 3.6e-13 80.1 181 28.2
VMungo0720G2025 Vigna mungo HOM05D004599 ORTHO05D005564 3.6e-13 80.1 181 28.7
Gorai.005G036200 Gossypium raimondii HOM05D004599 ORTHO05D005564 4.7e-13 79.7 204 26.5
Psat0s3917g0040 Pisum sativum HOM05D004599 ORTHO05D005564 4.7e-13 79.7 181 29.8
COL.COLO4_07140 Corchorus olitorius HOM05D004599 ORTHO05D005564 6.2e-13 79.3 163 31.3
Eucgr.H02878 Eucalyptus grandis HOM05D004599 ORTHO05D005564 6.2e-13 79.3 186 31.2
Potri.010G062700 Populus trichocarpa HOM05D004599 ORTHO05D005564 6.2e-13 79.3 183 30.1
Lj6g0015914 Lotus japonicus HOM05D004599 ORTHO05D005564 8.1e-13 79.0 181 29.8
Peaxi162Scf00125g01026 Petunia axillaris HOM05D004599 ORTHO05D005564 8.1e-13 79.0 174 29.9
Sopen09g034030 Solanum pennellii HOM05D004599 ORTHO05D005564 1.1e-12 78.6 177 29.4
SGA_v2.0_scaffold155G37242 Striga asiatica HOM05D004599 ORTHO05D005564 1.1e-12 78.6 203 28.6
Solyc09g091050.4 Solanum lycopersicum HOM05D004599 ORTHO05D005564 1.4e-12 78.2 177 28.8
Ca_26211_v3 Cicer arietinum L. HOM05D004599 ORTHO05D005564 2.3e-12 77.4 181 30.4
Phvul.007G232800 Phaseolus vulgaris HOM05D004599 ORTHO05D005564 2.3e-12 77.4 181 28.2
Actinidia25094 Actinidia chinensis HOM05D004599 ORTHO05D005564 4.0e-12 76.6 170 30.6
CDE05G1179 Ceratophyllum demersum HOM05D004599 ORTHO05D005564 4.0e-12 76.6 147 32.0
Nitab4.5_0000867g0040 Nicotiana tabacum HOM05D004599 ORTHO05D005564 5.2e-12 76.3 173 30.1
CAN.G812.39 Capsicum annuum HOM05D004599 ORTHO05D005564 6.8e-12 75.9 173 30.6
SMO358G0364 Selaginella moellendorffii HOM05D004599 ORTHO05D005564 6.8e-12 75.9 198 30.8
ATR0088G024 Amborella trichopoda HOM05D004599 ORTHO05D005564 1.2e-11 75.1 179 28.5
TPR.G23991 Trifolium pratense HOM05D004599 ORTHO05D005564 2.0e-11 74.3 181 28.2
unitig_32.g10859 Utricularia gibba HOM05D004599 ORTHO05D005564 2.6e-11 73.9 181 27.6
C04p42390 Brassica napus HOM05D004599 ORTHO05D005564 3.4e-11 73.6 181 28.2
Lalb_Chr03g0036871 Lupinus albus HOM05D004599 ORTHO05D005564 4.4e-11 73.2 181 29.8
Nitab4.5_0000451g0060 Nicotiana tabacum HOM05D004599 ORTHO05D005564 4.4e-11 73.2 173 29.5
HPP92_012645 Vanilla planifolia HOM05D004599 ORTHO05D005564 4.4e-11 73.2 175 29.7
A04p08630 Brassica napus HOM05D004599 ORTHO05D005564 7.5e-11 72.4 197 26.9
Gohir.D02G032700 Gossypium hirsutum HOM05D004599 ORTHO05D005564 3.7e-10 70.1 118 33.9
Ah.13g074980 Amaranthus hybridus HOM05D004599 ORTHO05D005564 1.1e-09 68.6 142 33.1
BraA04t16557Z Brassica rapa HOM05D004599 ORTHO05D005564 3.2e-09 67.0 206 26.2
BolC4t25820H Brassica oleracea HOM05D004599 ORTHO05D005564 4.1e-09 66.6 203 26.1
Oeu008817.2 Olea europaea HOM05D004599 ORTHO05D005564 7.1e-09 65.9 143 28.0
arahy.Tifrunner.gnm1.ann1.SDH4Q1 Arachis hypogaea HOM05D001692 ORTHO05D003541 3.5e-08 63.5 107 34.6
arahy.Tifrunner.gnm1.ann1.RU54A6 Arachis hypogaea HOM05D001692 ORTHO05D003541 4.6e-08 63.2 107 34.6
TAR627G0639 Trochodendron aralioides HOM05D001692 ORTHO05D003541 7.8e-08 62.4 102 33.3
Mapoly0061s0016 Marchantia polymorpha HOM05D000524 ORTHO05D000381 5.1e-07 59.7 101 33.7
SGA_v2.0_scaffold62G21405 Striga asiatica HOM05D000524 ORTHO05D000381 5.1e-07 59.7 106 35.8
Haze_11510 Corylus avellana HOM05D004599 ORTHO05D005564 6.6e-07 59.3 93 36.6
PGSC0003DMG400015007 Solanum tuberosum HOM05D000408 ORTHO05D000655 6.6e-07 59.3 86 36.0
HPP92_008608 Vanilla planifolia HOM05D000524 ORTHO05D000381 6.6e-07 59.3 94 37.2
CSS0027870 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 8.6e-07 58.9 106 34.0
CSS0029038 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 8.6e-07 58.9 106 34.0
Gohir.D05G188200 Gossypium hirsutum HOM05D000524 ORTHO05D000381 8.6e-07 58.9 106 34.0
Gorai.009G193500 Gossypium raimondii HOM05D000524 ORTHO05D000381 8.6e-07 58.9 106 34.0
Nitab4.5_0006294g0060 Nicotiana tabacum HOM05D000408 ORTHO05D008650 8.6e-07 58.9 86 34.9
SalBow2G1411 Salvia bowleyana HOM05D004599 ORTHO05D005564 8.6e-07 58.9 181 27.1
Solyc04g015070.3 Solanum lycopersicum HOM05D000408 ORTHO05D000655 8.6e-07 58.9 86 36.0
Sopen04g007090 Solanum pennellii HOM05D000408 ORTHO05D008650 8.6e-07 58.9 86 36.0
EL10Ac9g21027 Beta vulgaris HOM05D000524 ORTHO05D000381 1.1e-06 58.5 96 38.5
CAN.G1263.33 Capsicum annuum HOM05D000408 ORTHO05D008650 1.1e-06 58.5 86 34.9
AUR62031786 Chenopodium quinoa HOM05D000524 ORTHO05D000381 1.1e-06 58.5 104 34.6
Gohir.A05G185400 Gossypium hirsutum HOM05D000524 ORTHO05D000381 1.1e-06 58.5 106 34.0
Lj3A633T11 Lonicera japonica HOM05D004599 ORTHO05D005564 2.5e-06 57.4 94 35.1
Os06g0685300 Oryza sativa ssp. japonica HOM05D000524 ORTHO05D000381 2.5e-06 57.4 94 35.1
SalBow4G2229 Salvia bowleyana HOM05D000524 ORTHO05D000381 2.5e-06 57.4 106 33.0
Nitab4.5_0000147g0340 Nicotiana tabacum HOM05D000408 ORTHO05D008650 3.3e-06 57.0 86 34.9
Peaxi162Scf00123g00069 Petunia axillaris HOM05D000524 ORTHO05D000381 3.3e-06 57.0 95 40.0
Sed0003697 Sechium edule HOM05D000259 ORTHO05D000155 3.3e-06 57.0 106 34.9
AUR62023999 Chenopodium quinoa HOM05D000524 ORTHO05D000381 4.3e-06 56.6 94 36.2
AUR62031784 Chenopodium quinoa HOM05D000524 ORTHO05D000381 4.3e-06 56.6 94 36.2
Cc06_g03970 Coffea canephora HOM05D000524 ORTHO05D000381 4.3e-06 56.6 94 37.2
Os09g0538800 Oryza sativa ssp. japonica HOM05D000524 ORTHO05D000381 4.3e-06 56.6 97 34.0
ATR0585G029 Amborella trichopoda HOM05D001692 ORTHO05D003541 5.6e-06 56.2 107 33.6
Cfa025744 Carpinus fangiana HOM05D000524 ORTHO05D003541 5.6e-06 56.2 124 32.3
Cre06.g305750 Chlamydomonas reinhardtii HOM05D003071 ORTHO05D000964 5.6e-06 56.2 106 33.0
Nn2g10838 Nelumbo nucifera HOM05D000524 ORTHO05D000381 5.6e-06 56.2 108 34.3
Nn5g30767 Nelumbo nucifera HOM05D000524 ORTHO05D000381 5.6e-06 56.2 108 34.3
SEGI_26619 Sequoiadendron giganteum HOM05D000259 ORTHO05D000155 5.6e-06 56.2 105 34.3
arahy.Tifrunner.gnm1.ann1.YMBY6G Arachis hypogaea HOM05D002176 ORTHO05D002598 7.3e-06 55.8 80 36.2
arahy.Tifrunner.gnm1.ann1.ZDME2F Arachis hypogaea HOM05D002176 ORTHO05D002598 7.3e-06 55.8 80 36.2
Phvul.006G136200 Phaseolus vulgaris HOM05D002176 ORTHO05D002598 7.3e-06 55.8 89 34.8
PGSC0003DMG400008571 Solanum tuberosum HOM05D001692 ORTHO05D003541 7.3e-06 55.8 112 32.1
CANSAT56G2730 Cannabis sativa HOM05D000408 ORTHO05D008650 9.5e-06 55.5 80 37.5
MELO3C025594.2 Cucumis melo HOM05D001692 ORTHO05D003541 9.5e-06 55.5 109 31.2
Sc20g0001610 Simmondsia chinensis HOM05D000524 ORTHO05D000381 9.5e-06 55.5 108 35.2


User provided reference genes

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