Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 9.5e-81 303.5 161 100.0
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 1.3e-21 107.1 109 51.4
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 1.3e-21 107.1 122 46.7
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 2.2e-21 106.3 111 45.9
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 2.9e-21 105.9 115 44.3
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 2.9e-21 105.9 120 46.7
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 2.9e-21 105.9 120 46.7
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 3.8e-21 105.5 105 48.6
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 3.8e-21 105.5 121 47.1
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 5.0e-21 105.1 112 46.4
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 5.0e-21 105.1 105 50.5
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 6.5e-21 104.8 112 45.5
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 6.5e-21 104.8 121 47.1
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 6.5e-21 104.8 119 45.4
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 2.5e-20 102.8 98 46.9
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 2.5e-20 102.8 122 45.1
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 2.5e-20 102.8 107 50.5
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 4.2e-20 102.1 101 49.5
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 4.2e-20 102.1 121 47.1
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 5.5e-20 101.7 106 50.0
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 5.5e-20 101.7 102 49.0
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 5.5e-20 101.7 115 46.1
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 7.2e-20 101.3 123 45.5
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 7.2e-20 101.3 95 49.5
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 7.2e-20 101.3 120 46.7
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 9.4e-20 100.9 99 46.5
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 9.4e-20 100.9 123 43.9
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 2.7e-19 99.4 90 50.0
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 2.7e-19 99.4 111 44.1
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 2.7e-19 99.4 91 48.4
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 2.7e-19 99.4 103 49.5
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 4.7e-19 98.6 103 46.6
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 4.7e-19 98.6 103 46.6
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 6.1e-19 98.2 103 46.6
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 6.1e-19 98.2 90 47.8
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 7.9e-19 97.8 94 50.0
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 7.9e-19 97.8 109 46.8
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 7.9e-19 97.8 123 41.5
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 1.4e-18 97.1 107 44.9
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 1.4e-18 97.1 111 43.2
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 1.8e-18 96.7 125 44.0
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 1.8e-18 96.7 97 48.5
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 2.3e-18 96.3 117 41.0
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 2.3e-18 96.3 92 51.1
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 3.0e-18 95.9 117 39.3
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 3.0e-18 95.9 119 39.5
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 3.0e-18 95.9 92 51.1
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 3.9e-18 95.5 118 44.1
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 3.9e-18 95.5 125 45.6
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 3.9e-18 95.5 117 43.6
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 6.7e-18 94.7 90 51.1
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 6.7e-18 94.7 105 45.7
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 6.7e-18 94.7 107 47.7
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 8.8e-18 94.4 92 48.9
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 1.1e-17 94.0 94 47.9
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 1.1e-17 94.0 92 48.9
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 1.1e-17 94.0 117 41.0
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 2.0e-17 93.2 120 39.2
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 2.6e-17 92.8 116 42.2
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 4.4e-17 92.0 108 43.5
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 4.4e-17 92.0 106 44.3
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 5.7e-17 91.7 123 43.1
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 1.3e-16 90.5 123 43.1
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 1.3e-16 90.5 123 43.1
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 1.7e-16 90.1 123 43.1
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 1.7e-16 90.1 104 45.2
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 2.2e-16 89.7 119 41.2
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 2.2e-16 89.7 123 43.1
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 2.2e-16 89.7 122 42.6
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 2.2e-16 89.7 117 40.2
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 3.7e-16 89.0 123 42.3
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 6.3e-16 88.2 107 45.8
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 8.2e-16 87.8 120 40.8
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 8.2e-16 87.8 120 40.8
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 8.2e-16 87.8 120 40.8
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 1.8e-15 86.7 102 47.1
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 1.8e-15 86.7 123 41.5
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 2.4e-15 86.3 100 40.0
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 6.9e-15 84.7 89 46.1
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 1.2e-14 84.0 106 44.3
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 2.0e-14 83.2 76 51.3
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 1.7e-13 80.1 92 42.4
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 2.9e-13 79.3 100 43.0
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 5.0e-13 78.6 105 38.1
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 1.1e-12 77.4 116 38.8
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 4.7e-11 72.0 64 54.7
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 1.5e-09 67.0 58 51.7
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.5e-09 67.0 120 35.8
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.5e-09 67.0 120 35.8
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 2.0e-09 66.6 94 41.5
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 3.3e-09 65.9 75 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 2.2e-08 63.2 61 49.2
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 1.4e-07 60.5 90 37.8
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 4.1e-07 58.9 68 45.6
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 4.1e-07 58.9 80 43.8
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 9.1e-07 57.8 61 41.0
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 2.0e-06 56.6 67 40.3


User provided reference genes

Program Settings