Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 4.7e-179 631.7 415 100.0
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 3.7e-91 339.7 395 56.2
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.8e-90 337.4 391 53.7
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 3.5e-86 323.2 396 52.5
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.9e-84 317.4 410 50.5
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 7.4e-84 315.5 394 52.5
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.8e-83 312.8 408 54.2
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 3.4e-81 306.6 379 54.1
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.7e-81 305.4 417 51.1
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 1.3e-80 304.7 378 55.3
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 2.2e-80 303.9 395 53.4
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.8e-80 303.1 417 50.8
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 2.5e-79 300.4 377 55.2
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 5.5e-79 299.3 402 52.2
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 5.5e-79 299.3 373 52.5
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.6e-78 297.7 377 54.4
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.0e-77 295.0 403 53.8
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.0e-77 295.0 403 53.8
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 1.8e-77 294.3 403 53.8
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 1.1e-76 291.6 397 51.6
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 1.5e-76 291.2 397 51.9
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 2.5e-76 290.4 424 47.6
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 5.7e-76 289.3 388 52.8
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 5.7e-76 289.3 401 51.9
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 8.2e-75 285.4 390 55.6
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 1.4e-74 284.6 395 51.9
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 9.1e-74 282.0 442 46.8
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.5e-73 281.2 393 50.4
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 7.7e-73 278.9 379 45.1
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 7.7e-73 278.9 394 51.5
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 6.5e-72 275.8 394 52.5
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 8.5e-72 275.4 393 48.3
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.1e-71 275.0 402 46.5
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 3.2e-71 273.5 390 52.6
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 3.2e-71 273.5 388 52.3
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 3.2e-71 273.5 378 52.4
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 3.6e-70 270.0 373 50.1
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.6e-70 270.0 373 50.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.7e-70 269.6 373 50.1
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-69 268.1 410 47.3
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.3e-69 267.3 389 54.0
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 1.5e-68 264.6 397 48.4
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 4.4e-68 263.1 397 49.6
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 5.7e-68 262.7 394 47.0
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 5.7e-68 262.7 411 40.4
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 2.8e-67 260.4 398 48.7
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 2.8e-67 260.4 388 50.3
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.8e-67 259.6 423 48.0
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 6.3e-67 259.2 393 47.6
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 6.3e-67 259.2 395 49.4
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 6.3e-67 259.2 395 49.4
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.1e-66 256.5 406 45.8
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 5.3e-66 256.1 396 46.0
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.5e-65 254.6 396 48.7
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 2.0e-65 254.2 402 45.5
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 2.0e-65 254.2 402 45.5
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 2.0e-65 254.2 388 50.5
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 3.5e-65 253.4 388 49.5
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 1.7e-64 251.1 397 48.4
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.2e-64 250.8 400 49.2
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.2e-64 250.8 395 50.1
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.2e-64 250.8 388 48.5
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 5.0e-64 249.6 396 49.0
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 6.5e-64 249.2 428 44.4
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-63 248.4 425 43.8
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.5e-63 248.1 401 48.9
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 1.5e-63 248.1 398 46.7
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 1.9e-63 247.7 397 48.4
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 5.5e-63 246.1 387 48.3
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 1.2e-62 245.0 396 49.0
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-62 245.0 416 44.5
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 1.2e-62 245.0 397 48.6
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 2.1e-62 244.2 388 47.9
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 2.1e-62 244.2 387 44.7
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 3.6e-62 243.4 396 47.0
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 4.7e-62 243.0 399 48.4
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 4.7e-62 243.0 394 48.2
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.1e-62 242.7 399 48.1
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 8.0e-62 242.3 399 48.1
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 8.0e-62 242.3 402 46.8
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 8.0e-62 242.3 387 45.5
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 1.4e-61 241.5 399 47.9
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 3.0e-61 240.4 396 46.5
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 8.8e-61 238.8 375 49.1
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 8.8e-61 238.8 403 45.7
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.5e-60 238.0 388 47.4
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 4.4e-60 236.5 345 53.0
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 7.4e-60 235.7 378 48.7
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 2.2e-59 234.2 378 48.7
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 2.2e-59 234.2 384 47.1
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.8e-59 233.8 396 46.5
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 3.7e-59 233.4 378 48.1
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 6.3e-59 232.6 397 47.6
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 6.3e-59 232.6 378 48.4
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 8.2e-59 232.3 383 45.2
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 1.1e-58 231.9 407 45.7
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 2.4e-58 230.7 396 47.2
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 7.0e-58 229.2 399 40.6
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 7.0e-58 229.2 377 48.5
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 7.0e-58 229.2 396 46.5
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.2e-57 228.4 395 46.3
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 2.6e-57 227.3 377 45.4
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 2.6e-57 227.3 377 45.4
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 2.6e-57 227.3 377 45.4
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 2.6e-57 227.3 377 45.4
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 2.6e-57 227.3 377 45.9
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 3.5e-57 226.9 398 43.7
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.0e-56 225.3 403 34.7
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 1.7e-56 224.6 388 46.4
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.7e-56 224.6 396 43.9
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 1.7e-56 224.6 377 45.1
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 1.7e-56 224.6 377 45.1
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.7e-56 224.6 377 45.1
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 5.0e-56 223.0 380 45.5
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 5.0e-56 223.0 399 44.4
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 5.0e-56 223.0 398 46.2
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 5.0e-56 223.0 334 50.9
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 6.5e-56 222.6 409 43.0
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 8.5e-56 222.2 444 34.9
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.1e-55 221.9 394 43.9
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 3.2e-55 220.3 394 43.4
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 2.1e-54 217.6 339 51.6
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 3.6e-54 216.9 361 48.8
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.4e-53 214.9 402 39.3
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 9.8e-52 208.8 348 46.0
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 3.5e-49 200.3 383 34.7
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.3e-48 198.4 397 44.1
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.3e-48 198.4 397 33.0
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-48 198.4 382 35.3
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 9.4e-47 192.2 148 59.5
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 1.6e-46 191.4 397 43.6
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 2.7e-46 190.7 397 43.3
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.6e-46 190.3 292 53.4
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 1.0e-45 188.7 389 35.7
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.3e-45 187.6 518 34.7
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 4.0e-45 186.8 394 43.4
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 1.1e-42 178.7 315 47.3
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 6.6e-40 169.5 173 49.7
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 4.2e-39 166.8 137 57.7
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 2.9e-35 154.1 147 52.4
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 4.9e-35 153.3 118 61.9
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.9e-35 153.3 124 59.7
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 4.6e-33 146.7 160 45.0
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 9.5e-31 139.0 412 34.7
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 8.0e-30 136.0 126 54.0
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 4.4e-28 130.2 119 49.6
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 7.5e-28 129.4 139 46.8
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 8.3e-27 125.9 148 42.6
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 2.5e-23 114.4 108 56.5
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 5.8e-20 103.2 80 60.0
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-19 101.3 107 54.2
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 6.4e-19 99.8 88 61.4
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 7.8e-17 92.8 64 57.8
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 5.1e-16 90.1 295 38.0
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-15 89.0 128 41.4
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.2e-14 85.5 128 40.6
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 8.9e-13 79.3 153 33.3
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.5e-12 78.6 121 38.0
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 5.8e-12 76.6 68 55.9
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 3.7e-11 73.9 47 68.1
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.2e-09 68.9 64 56.2
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 7.3e-07 59.7 42 64.3
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 7.3e-07 59.7 40 70.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 7.3e-07 59.7 40 70.0
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 1.2e-06 58.9 67 41.8
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 3.6e-06 57.4 52 50.0
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 6.2e-06 56.6 36 66.7
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 6.2e-06 56.6 41 61.0


User provided reference genes

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