Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g000550 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 0.0e+00 1419.1 1003 100.0
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 9.6e-46 189.9 762 24.3
Cre01.g000500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 9.9e-43 179.9 254 39.8
Cre01.g000450 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 4.9e-42 177.6 254 39.0
Cre04.g217949 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.5e-22 112.8 250 30.4
Cre07.g340950 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 9.3e-17 93.6 317 24.9
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 2.9e-10 72.0 259 27.4
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 8.4e-10 70.5 268 26.5
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 1.1e-09 70.1 257 24.9
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 1.4e-09 69.7 259 26.6
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 1.9e-09 69.3 259 25.9
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 1.9e-09 69.3 261 26.1
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 3.2e-09 68.6 250 27.6
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 4.2e-09 68.2 262 26.0
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 9.3e-09 67.0 270 22.6
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 1.6e-08 66.2 259 26.3
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 2.1e-08 65.9 259 26.3
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 2.7e-08 65.5 250 27.2
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 3.5e-08 65.1 259 25.1
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 3.5e-08 65.1 257 23.3
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 3.5e-08 65.1 257 23.3
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 3.5e-08 65.1 265 23.4
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 4.6e-08 64.7 261 26.1
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 4.6e-08 64.7 269 24.9
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 6.1e-08 64.3 271 25.8
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 7.9e-08 63.9 261 25.3
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 1.0e-07 63.5 265 25.3
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 1.0e-07 63.5 269 24.9
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 1.0e-07 63.5 261 24.9
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 1.3e-07 63.2 259 25.9
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 1.3e-07 63.2 259 25.1
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 1.3e-07 63.2 259 25.5
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.3e-07 63.2 259 26.3
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 1.3e-07 63.2 257 23.7
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 1.8e-07 62.8 248 24.6
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 2.3e-07 62.4 203 28.6
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 2.3e-07 62.4 259 25.9
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 2.3e-07 62.4 259 25.9
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 2.3e-07 62.4 263 24.0
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 3.0e-07 62.0 260 25.4
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 3.9e-07 61.6 259 25.9
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 3.9e-07 61.6 259 25.5
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 3.9e-07 61.6 250 26.4
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 5.1e-07 61.2 259 25.1
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 5.1e-07 61.2 263 23.6
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 5.1e-07 61.2 250 25.2
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 5.1e-07 61.2 259 24.3
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 6.7e-07 60.8 265 25.3
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 6.7e-07 60.8 205 27.3
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 6.7e-07 60.8 199 29.1
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 6.7e-07 60.8 257 24.1
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 6.7e-07 60.8 257 24.1
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 6.7e-07 60.8 259 25.5
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 6.7e-07 60.8 250 25.2
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 8.7e-07 60.5 268 24.3
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 8.7e-07 60.5 259 25.5
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 8.7e-07 60.5 203 25.6
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 8.7e-07 60.5 205 28.8
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 8.7e-07 60.5 259 25.9
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 1.1e-06 60.1 259 24.3
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.1e-06 60.1 257 23.7
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 1.5e-06 59.7 250 26.0
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 1.5e-06 59.7 261 24.5
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 1.5e-06 59.7 250 25.6
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.5e-06 59.7 250 25.6
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.5e-06 59.7 250 25.6
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 1.9e-06 59.3 252 25.0
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 1.9e-06 59.3 207 27.1
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 1.9e-06 59.3 260 23.5
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 2.5e-06 58.9 250 24.8
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 2.5e-06 58.9 259 25.1
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 2.5e-06 58.9 207 27.1
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 2.5e-06 58.9 259 23.6
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 2.5e-06 58.9 203 25.1
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 2.5e-06 58.9 259 25.5
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 3.3e-06 58.5 259 23.6
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 3.3e-06 58.5 261 24.5
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 3.3e-06 58.5 250 24.4
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 3.3e-06 58.5 203 27.6
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 3.3e-06 58.5 259 25.9
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 3.3e-06 58.5 250 25.2
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 3.3e-06 58.5 261 25.3
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 4.3e-06 58.2 261 24.5
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 4.3e-06 58.2 207 27.5
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 4.3e-06 58.2 260 23.5
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 4.3e-06 58.2 259 25.1
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 4.3e-06 58.2 259 25.5
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 4.3e-06 58.2 205 25.4
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 5.7e-06 57.8 261 24.5
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 5.7e-06 57.8 262 25.6
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 5.7e-06 57.8 263 24.7
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 5.7e-06 57.8 261 25.3
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 5.7e-06 57.8 270 24.1
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 5.7e-06 57.8 203 25.1
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 5.7e-06 57.8 259 25.5
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 5.7e-06 57.8 250 25.2
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 7.4e-06 57.4 261 24.5
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 7.4e-06 57.4 259 25.5
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 7.4e-06 57.4 205 26.8
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 9.7e-06 57.0 262 24.8
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 9.7e-06 57.0 262 24.8
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 9.7e-06 57.0 261 24.9


User provided reference genes

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