Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g000500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 0.0e+00 1355.5 656 100.0
Cre01.g000450 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 8.8e-250 867.1 614 70.5
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.6e-211 738.8 621 59.6
Cre04.g217949 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.3e-56 225.3 551 29.0
Cre07.g340950 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 4.0e-53 213.8 619 27.0
Cre01.g000550 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.4e-42 178.7 254 39.8
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 9.4e-34 149.4 538 25.1
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 1.6e-33 148.7 539 24.7
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 4.6e-33 147.1 409 26.9
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 1.0e-32 146.0 536 24.4
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 1.4e-32 145.6 539 26.0
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 1.4e-32 145.6 532 24.4
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 3.0e-32 144.4 532 25.8
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 3.9e-32 144.1 534 24.2
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 5.1e-32 143.7 538 24.9
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 6.7e-32 143.3 533 24.4
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 8.8e-32 142.9 531 24.9
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 1.1e-31 142.5 534 24.5
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 1.1e-31 142.5 539 24.1
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 1.5e-31 142.1 531 24.5
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 1.5e-31 142.1 531 24.5
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 2.0e-31 141.7 531 24.7
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 2.5e-31 141.4 541 24.6
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 2.5e-31 141.4 531 23.7
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 2.5e-31 141.4 534 24.5
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 2.5e-31 141.4 531 24.7
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 3.3e-31 141.0 531 24.1
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 3.3e-31 141.0 531 24.3
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 3.3e-31 141.0 539 24.7
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 4.3e-31 140.6 531 24.3
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 5.7e-31 140.2 298 31.2
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 7.4e-31 139.8 534 24.7
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 7.4e-31 139.8 563 24.0
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 9.7e-31 139.4 531 24.3
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 9.7e-31 139.4 531 24.3
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 9.7e-31 139.4 539 23.9
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 9.7e-31 139.4 539 24.3
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 9.7e-31 139.4 539 24.3
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 9.7e-31 139.4 539 24.3
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 9.7e-31 139.4 531 24.5
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 9.7e-31 139.4 298 30.5
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 1.3e-30 139.0 539 23.9
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 1.3e-30 139.0 539 24.1
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 1.3e-30 139.0 539 24.1
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 1.7e-30 138.7 542 24.7
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 1.7e-30 138.7 534 24.0
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 1.7e-30 138.7 533 24.4
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 2.2e-30 138.3 531 23.7
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 2.8e-30 137.9 562 24.9
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 2.8e-30 137.9 531 24.3
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 2.8e-30 137.9 532 23.7
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 3.7e-30 137.5 541 24.8
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 3.7e-30 137.5 541 24.6
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 3.7e-30 137.5 541 24.8
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 3.7e-30 137.5 541 24.6
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 3.7e-30 137.5 539 23.7
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 3.7e-30 137.5 533 23.8
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 3.7e-30 137.5 534 24.7
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 3.7e-30 137.5 531 23.5
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 3.7e-30 137.5 533 24.8
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 3.7e-30 137.5 532 25.0
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 3.7e-30 137.5 539 24.3
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 3.7e-30 137.5 531 24.5
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 4.8e-30 137.1 536 24.6
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 6.3e-30 136.7 533 23.8
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 6.3e-30 136.7 560 24.3
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 8.2e-30 136.3 531 23.9
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 1.1e-29 136.0 532 24.2
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 1.1e-29 136.0 533 24.2
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 1.8e-29 135.2 543 24.9
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 1.8e-29 135.2 535 24.1
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 2.4e-29 134.8 540 24.3
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 3.1e-29 134.4 534 24.3
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 3.1e-29 134.4 532 24.1
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 3.1e-29 134.4 535 24.3
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 3.1e-29 134.4 535 23.9
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 4.1e-29 134.0 534 24.3
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 4.1e-29 134.0 533 24.6
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 5.3e-29 133.7 544 24.8
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 5.3e-29 133.7 543 24.5
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 5.3e-29 133.7 533 24.0
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 5.3e-29 133.7 331 29.0
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 5.3e-29 133.7 532 24.1
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 6.9e-29 133.3 532 24.4
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 6.9e-29 133.3 534 24.0
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 9.1e-29 132.9 533 24.0
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 9.1e-29 132.9 532 24.4
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 1.2e-28 132.5 532 23.5
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.2e-28 132.5 531 23.7
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 1.2e-28 132.5 539 23.9
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 1.5e-28 132.1 543 24.7
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 1.5e-28 132.1 532 24.6
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 1.5e-28 132.1 532 24.4
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 1.5e-28 132.1 531 23.5
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 1.5e-28 132.1 532 23.9
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 2.0e-28 131.7 534 23.8
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 2.0e-28 131.7 299 29.8
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 2.0e-28 131.7 533 23.8
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 2.6e-28 131.3 532 23.9
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 3.4e-28 131.0 533 23.5
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 3.4e-28 131.0 550 24.5
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 4.5e-28 130.6 607 23.6
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 4.5e-28 130.6 560 24.3
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 5.9e-28 130.2 357 28.3
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 7.7e-28 129.8 509 24.4
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 1.0e-27 129.4 534 24.5
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 1.0e-27 129.4 297 30.3
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 1.3e-27 129.0 327 27.8
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.3e-27 129.0 549 24.0
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 1.7e-27 128.6 559 23.1
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 1.7e-27 128.6 442 26.2
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 2.2e-27 128.3 299 29.1
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 2.9e-27 127.9 533 23.1
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 3.8e-27 127.5 309 30.1
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 3.8e-27 127.5 539 24.7
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 5.0e-27 127.1 531 23.5
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 5.0e-27 127.1 532 23.3
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 8.5e-27 126.3 531 22.8
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 8.5e-27 126.3 534 23.2
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 3.2e-26 124.4 299 29.1
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 3.2e-26 124.4 299 29.4
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 5.5e-26 123.6 563 24.5
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 9.4e-26 122.9 309 28.2
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 2.7e-25 121.3 535 23.7
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 4.7e-25 120.6 533 23.8
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 1.4e-24 119.0 240 35.0
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 1.8e-24 118.6 531 24.3
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 2.3e-24 118.2 445 25.2
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 3.0e-24 117.9 292 29.1
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 3.9e-24 117.5 280 28.9
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 8.8e-24 116.3 444 24.5
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.1e-23 115.9 445 24.9
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 4.4e-23 114.0 471 23.6
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 7.4e-23 113.2 546 23.4
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 9.7e-23 112.8 532 22.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 6.3e-22 110.2 438 25.8
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 1.4e-21 109.0 199 36.2
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 3.1e-21 107.8 531 22.2
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 7.0e-21 106.7 302 28.5
Cre07.g332500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 9.1e-21 106.3 540 22.4
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 1.7e-19 102.1 203 34.0
C04p13130 Brassica napus HOM05D003542 ORTHO05D004799 1.7e-19 102.1 203 34.0
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 4.7e-17 94.0 400 23.2
HanXRQChr17g0537331 Helianthus annuus HOM05D003542 ORTHO05D004799 2.3e-16 91.7 208 32.2
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 8.8e-16 89.7 398 23.1
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 1.4e-13 82.4 369 25.2
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 2.4e-13 81.6 165 30.9
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 9.1e-13 79.7 290 24.5
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 1.2e-12 79.3 449 22.0
MCO09G799 Micromonas commoda HOM05D003542 ORTHO05D004799 7.7e-12 76.6 460 23.0
PRCOL_00003997 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 6.5e-11 73.6 322 25.2
MCO14G411 Micromonas commoda HOM05D003542 ORTHO05D049034 1.1e-10 72.8 429 24.5
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 2.3e-08 65.1 303 22.4
PRCOL_00004785 Prasinoderma coloniale HOM05D003542 ORTHO05D049253 4.4e-07 60.8 427 23.2
MBI06_g04285_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D018761 1.3e-06 59.3 106 32.1
Cpa.g.sc2620.1 Carica papaya HOM05D003542 ORTHO05D018761 1.7e-06 58.9 98 35.7
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 1.7e-06 58.9 75 37.3


User provided reference genes

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