Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 0.0e+00 1356.3 650 100.0
Cre01.g000450 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 2.6e-225 785.8 528 70.1
Cre01.g000500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 2.3e-210 736.1 621 59.6
Cre07.g340950 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 2.3e-77 294.3 570 32.3
Cre04.g217949 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.1e-74 285.4 568 33.1
Cre01.g000550 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.1e-47 195.7 762 24.3
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 6.8e-45 186.4 544 28.5
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 2.6e-44 184.5 544 28.1
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 2.6e-44 184.5 549 29.0
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 5.8e-44 183.3 566 26.1
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 8.4e-43 179.5 543 26.3
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 1.9e-42 178.3 542 28.6
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 1.9e-42 178.3 544 27.6
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 5.4e-42 176.8 543 28.0
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 7.1e-42 176.4 543 28.0
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 7.1e-42 176.4 542 27.9
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 9.3e-42 176.0 542 27.7
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 2.7e-41 174.5 542 27.5
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 2.7e-41 174.5 578 27.2
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 2.7e-41 174.5 555 27.9
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 3.5e-41 174.1 576 28.1
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 3.5e-41 174.1 576 26.7
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 4.6e-41 173.7 542 27.9
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 4.6e-41 173.7 545 27.3
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 6.0e-41 173.3 542 27.1
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 7.8e-41 172.9 551 27.8
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.3e-40 172.2 576 28.0
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 1.3e-40 172.2 542 27.5
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 1.3e-40 172.2 590 26.9
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 3.0e-40 171.0 573 27.7
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 3.0e-40 171.0 542 27.3
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 3.0e-40 171.0 541 28.5
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 3.0e-40 171.0 542 26.8
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 3.9e-40 170.6 542 27.9
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 3.9e-40 170.6 542 26.6
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 3.9e-40 170.6 543 27.4
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 3.9e-40 170.6 546 26.9
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 3.9e-40 170.6 655 25.2
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 5.1e-40 170.2 552 27.5
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 5.1e-40 170.2 542 27.3
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 5.1e-40 170.2 576 28.0
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 5.1e-40 170.2 543 27.3
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 5.1e-40 170.2 608 27.3
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 6.6e-40 169.9 541 27.2
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 6.6e-40 169.9 542 27.5
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 6.6e-40 169.9 577 27.6
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 6.6e-40 169.9 543 27.1
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 6.6e-40 169.9 553 26.8
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 8.7e-40 169.5 554 27.8
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 1.1e-39 169.1 544 28.7
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 1.1e-39 169.1 542 26.9
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 1.1e-39 169.1 543 27.3
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 1.5e-39 168.7 542 27.5
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 1.5e-39 168.7 542 27.5
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 1.5e-39 168.7 543 27.1
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 1.5e-39 168.7 542 27.3
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 1.9e-39 168.3 542 27.3
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.9e-39 168.3 574 27.9
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 2.5e-39 167.9 556 27.7
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 2.5e-39 167.9 543 27.1
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 2.5e-39 167.9 542 27.7
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 3.3e-39 167.5 473 29.4
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 3.3e-39 167.5 555 27.0
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 3.3e-39 167.5 542 27.7
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 3.3e-39 167.5 542 27.5
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 3.3e-39 167.5 573 26.9
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 4.3e-39 167.2 574 27.9
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 4.3e-39 167.2 542 26.6
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 5.6e-39 166.8 542 26.9
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 5.6e-39 166.8 542 26.9
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 7.3e-39 166.4 545 27.2
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 9.6e-39 166.0 551 26.3
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 1.3e-38 165.6 542 27.3
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 1.3e-38 165.6 542 27.3
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 1.3e-38 165.6 543 27.3
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 1.3e-38 165.6 559 27.9
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 1.3e-38 165.6 552 28.1
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 1.6e-38 165.2 542 26.9
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 1.6e-38 165.2 542 26.9
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 1.6e-38 165.2 542 26.9
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 2.1e-38 164.9 542 26.6
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 2.1e-38 164.9 544 27.0
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 2.1e-38 164.9 596 26.7
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 2.1e-38 164.9 546 27.5
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 2.1e-38 164.9 544 26.7
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 2.1e-38 164.9 542 26.8
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 2.8e-38 164.5 551 26.1
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 2.8e-38 164.5 457 29.5
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 3.6e-38 164.1 542 26.8
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 3.6e-38 164.1 543 26.5
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 4.8e-38 163.7 554 26.7
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 4.8e-38 163.7 569 26.4
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 4.8e-38 163.7 542 26.6
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 4.8e-38 163.7 543 26.3
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 4.8e-38 163.7 561 26.6
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 6.2e-38 163.3 553 26.4
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 6.2e-38 163.3 553 26.4
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 6.2e-38 163.3 551 26.0
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 8.1e-38 162.9 542 26.4
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 1.1e-37 162.5 542 26.6
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.1e-37 162.5 482 29.0
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 1.1e-37 162.5 557 27.6
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 1.4e-37 162.2 544 27.6
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 1.8e-37 161.8 543 27.4
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 2.4e-37 161.4 542 26.6
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 2.4e-37 161.4 555 27.2
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 2.4e-37 161.4 544 27.0
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 3.1e-37 161.0 458 29.9
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 3.1e-37 161.0 482 28.8
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 3.1e-37 161.0 497 29.0
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 3.1e-37 161.0 543 27.6
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 4.0e-37 160.6 560 26.2
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 4.0e-37 160.6 449 30.1
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 5.3e-37 160.2 543 27.6
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 5.3e-37 160.2 555 26.7
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 6.9e-37 159.8 544 26.5
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 6.9e-37 159.8 560 26.1
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 6.9e-37 159.8 470 29.8
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.2e-36 159.1 565 26.5
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 1.2e-36 159.1 502 28.3
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 1.5e-36 158.7 555 26.7
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 1.5e-36 158.7 571 26.8
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 1.5e-36 158.7 542 25.8
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 2.0e-36 158.3 549 27.1
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 2.6e-36 157.9 543 26.0
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 3.4e-36 157.5 542 27.1
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 3.4e-36 157.5 543 25.6
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 4.4e-36 157.1 450 28.2
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 4.4e-36 157.1 368 32.1
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 2.2e-35 154.8 570 26.7
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 3.8e-35 154.1 447 28.2
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 8.4e-35 152.9 458 28.8
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 1.4e-34 152.1 570 25.4
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 3.2e-34 151.0 451 27.5
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 6.0e-33 146.7 450 28.9
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 5.1e-32 143.7 559 25.6
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.5e-31 142.1 444 27.5
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 1.5e-31 142.1 557 24.8
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 9.6e-31 139.4 404 29.0
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 3.1e-29 134.4 405 27.4
PRCOL_00007053 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 9.0e-29 132.9 512 27.1
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 1.2e-28 132.5 564 25.5
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 5.8e-28 130.2 442 27.8
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 4.9e-27 127.1 398 27.1
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 2.7e-25 121.3 452 25.7
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 1.3e-24 119.0 375 28.8
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 5.1e-24 117.1 398 26.6
PRCOL_00003662 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 2.5e-23 114.8 461 24.7
PRCOL_00003997 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 1.6e-22 112.1 605 23.6
C04p13130 Brassica napus HOM05D003542 ORTHO05D004799 2.8e-22 111.3 327 28.4
MCO09G799 Micromonas commoda HOM05D003542 ORTHO05D004799 8.1e-22 109.8 375 27.7
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 1.8e-21 108.6 306 28.1
HanXRQChr17g0537351 Helianthus annuus HOM05D003542 ORTHO05D004799 2.9e-19 101.3 310 28.1
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 6.7e-16 90.1 405 24.7
PRCOL_00002802 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 1.1e-15 89.4 442 22.6
PRCOL_00004785 Prasinoderma coloniale HOM05D003542 ORTHO05D049253 3.3e-15 87.8 556 23.6
HanXRQChr17g0537331 Helianthus annuus HOM05D003542 ORTHO05D004799 9.6e-15 86.3 217 30.4
Ah.01g020250 Amaranthus hybridus HOM05D000763 ORTHO05D000599 1.7e-11 75.5 241 25.3
MCO13G070 Micromonas commoda HOM05D003542 ORTHO05D004799 1.1e-10 72.8 348 25.0
Cpa.g.sc90.39 Carica papaya HOM05D003542 ORTHO05D004799 1.4e-10 72.4 259 26.6
CBR_g8752 Chara braunii HOM05D003542 ORTHO05D015060 5.5e-10 70.5 316 24.1
CBR_g56721 Chara braunii HOM05D003542 ORTHO05D015060 7.2e-10 70.1 281 23.1
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.2e-09 69.3 296 24.3
MBI11_g07455_MAGBIO Magnolia biondii HOM05D000763 ORTHO05D000599 3.0e-08 64.7 221 23.5
Zm00001eb002290 Zea mays HOM05D000763 ORTHO05D000599 5.7e-07 60.5 204 22.5
CSS0037399 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 9.7e-07 59.7 108 34.3
CBR_g41334 Chara braunii HOM05D003542 ORTHO05D004799 9.7e-07 59.7 311 21.9
Lj8A410T33 Lonicera japonica HOM05D000763 ORTHO05D000599 9.7e-07 59.7 214 22.0
AUR62011458 Chenopodium quinoa HOM05D000763 ORTHO05D000599 3.7e-06 57.8 214 22.9
EL10Ac9g21854 Beta vulgaris HOM05D000763 ORTHO05D000599 4.8e-06 57.4 150 22.7


User provided reference genes

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