Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 0.0e+00 1465.3 724 100.0
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 3.5e-300 1034.6 704 71.3
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 1.3e-299 1032.7 704 71.2
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.9e-298 1028.9 757 66.6
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 3.6e-297 1024.6 701 70.3
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.1e-296 1023.1 736 68.1
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.4e-296 1022.7 747 66.3
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 4.0e-296 1021.1 719 70.2
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 2.4e-293 1011.9 699 70.2
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 3.2e-293 1011.5 754 65.5
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 4.2e-293 1011.1 755 66.1
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 6.0e-292 1007.3 702 69.7
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.1e-289 998.8 732 66.9
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 4.8e-289 997.7 737 67.3
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.8e-288 995.7 716 67.7
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.2e-287 993.0 732 66.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.9e-286 987.6 727 66.4
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.3e-283 979.5 813 60.5
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 2.4e-280 968.8 715 65.7
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.0e-279 965.7 697 66.4
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 9.9e-279 963.4 662 70.7
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.7e-278 962.6 724 65.3
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 6.4e-278 960.7 717 64.3
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 5.5e-277 957.6 703 65.9
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 1.3e-275 953.0 720 64.4
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 2.3e-275 952.2 707 66.1
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 3.0e-275 951.8 723 63.2
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 2.5e-274 948.7 720 64.4
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 1.6e-273 946.0 724 62.8
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.8e-273 945.3 705 66.7
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.3e-272 941.0 706 63.6
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 3.4e-271 938.3 719 62.3
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.0e-270 936.8 717 62.9
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 1.7e-270 936.0 724 62.3
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.7e-270 936.0 746 61.8
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 3.8e-270 934.9 706 63.3
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 6.5e-270 934.1 721 63.0
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 8.4e-270 933.7 729 61.9
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.2e-268 929.9 701 63.6
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 4.6e-268 927.9 733 63.6
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 3.0e-267 925.2 715 61.5
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 5.1e-267 924.5 741 62.1
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.8e-265 917.9 697 65.4
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 6.3e-265 917.5 722 61.5
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.1e-264 916.8 705 62.6
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 1.8e-264 916.0 705 62.6
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 2.4e-264 915.6 719 62.0
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 9.0e-264 913.7 706 64.6
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.0e-263 912.5 722 63.3
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 7.2e-261 904.0 701 62.6
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 9.4e-261 903.7 714 61.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 1.2e-260 903.3 697 62.3
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 2.1e-260 902.5 700 63.4
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 8.8e-259 897.1 613 69.8
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 2.5e-258 895.6 720 61.4
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.7e-257 892.9 743 60.0
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 4.7e-252 874.8 706 61.5
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.4e-251 873.2 700 62.6
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.6e-250 869.0 701 61.9
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.8e-249 864.8 729 60.5
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.4e-248 863.2 727 59.1
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.6e-247 859.0 698 61.5
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 9.4e-245 850.5 721 60.2
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.6e-244 849.7 697 61.0
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 8.0e-244 847.4 698 61.2
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 9.1e-240 833.9 618 67.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 3.5e-239 832.0 718 58.9
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 3.5e-239 832.0 707 60.4
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.3e-238 830.1 697 60.0
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 5.0e-238 828.2 704 59.2
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 6.5e-238 827.8 698 57.7
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.4e-235 820.1 662 61.0
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.3e-235 819.3 737 56.6
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 5.2e-235 818.1 697 59.5
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.2e-233 812.8 699 58.7
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 5.3e-232 808.1 705 57.9
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 7.2e-229 797.7 760 54.1
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.5e-226 790.0 698 56.7
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 3.1e-224 782.3 698 57.7
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 7.5e-218 761.1 694 55.9
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.7e-217 760.0 724 52.3
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 4.1e-216 755.4 547 67.1
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 3.5e-215 752.3 728 53.0
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 4.5e-215 751.9 675 55.1
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 3.9e-214 748.8 687 55.7
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 4.3e-213 745.3 663 56.3
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.2e-212 743.8 644 59.3
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.2e-212 743.8 723 52.1
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 6.1e-212 741.5 724 51.5
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 9.2e-208 727.6 630 58.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.6e-204 716.8 696 53.6
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 8.0e-204 714.5 696 52.3
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.3e-195 686.4 723 48.3
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.6e-188 663.7 699 49.8
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 7.3e-181 638.3 598 55.2
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 7.3e-181 638.3 640 54.5
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.8e-171 607.1 471 62.0
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.8e-171 607.1 712 47.8
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 3.9e-150 536.2 431 60.8
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 2.0e-146 523.9 503 54.5
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.7e-145 520.8 364 68.4
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 7.0e-131 472.2 694 39.6
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.1e-128 464.9 708 36.6
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 4.0e-118 429.9 708 36.4
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.8e-116 422.9 647 38.5
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.4e-115 420.6 626 38.5
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.2e-114 418.3 642 38.0
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.2e-111 408.3 362 56.1
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.3e-105 387.5 754 33.2
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.0e-102 377.1 768 33.3
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 3.7e-100 370.2 347 55.9
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 4.9e-92 343.2 337 54.9
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.2e-82 312.0 285 57.2
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.2e-71 275.4 559 31.8
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-70 272.3 187 68.4
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 5.8e-69 266.5 176 71.0
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.2e-58 232.3 170 61.8
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 2.3e-57 228.0 138 79.7
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 3.9e-57 227.3 140 77.9
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 6.2e-55 219.9 342 37.7
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 6.7e-41 173.3 484 29.5
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 6.9e-30 136.7 127 47.2
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-24 119.4 123 54.5
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.5e-24 119.0 85 63.5
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.2e-23 115.2 103 50.5
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 5.3e-14 84.0 412 22.8
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 7.7e-13 80.1 76 50.0
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.9e-12 78.2 80 46.2
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.2e-11 74.3 80 43.8
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 9.7e-08 63.2 88 40.9
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 4.8e-07 60.8 131 34.4
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.1e-06 59.7 45 68.9
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 9.1e-06 56.6 48 58.3


User provided reference genes

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