Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 7.9e-191 670.2 327 100.0
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 8.0e-143 510.8 299 80.6
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 8.3e-140 500.7 299 79.6
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 6.5e-137 491.1 299 76.3
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.9e-136 489.6 300 77.3
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.2e-136 488.8 299 77.9
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 2.7e-135 485.7 299 77.9
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.7e-135 485.0 300 77.7
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 1.0e-134 483.8 299 75.9
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 8.8e-134 480.7 300 74.7
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 2.0e-133 479.6 299 75.6
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 4.1e-131 471.9 299 73.9
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 5.4e-131 471.5 299 74.6
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 7.0e-131 471.1 298 75.2
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 7.0e-131 471.1 299 74.6
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.7e-130 469.2 318 70.8
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 3.5e-130 468.8 299 73.2
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.9e-129 465.7 298 73.8
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 3.6e-127 458.8 298 72.8
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 6.8e-126 454.5 298 71.8
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 5.7e-125 451.4 300 72.7
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.0e-122 443.0 299 70.6
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.5e-120 436.8 299 69.6
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.5e-120 436.0 343 62.7
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 1.6e-119 433.3 300 70.3
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 4.7e-119 431.8 260 77.7
Haze_09670 Corylus avellana HOM05D008272 ORTHO05D010429 3.7e-116 422.2 299 67.9
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 7.8e-114 414.5 307 63.8
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 5.0e-113 411.8 268 72.0
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 8.6e-113 411.0 346 60.4
PGR031G2232 Punica granatum HOM05D008272 ORTHO05D010429 3.6e-111 405.6 302 65.2
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 3.6e-111 405.6 301 65.8
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 6.2e-111 404.8 239 77.8
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.1e-110 404.1 307 64.2
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.2e-109 400.6 299 65.2
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 3.2e-107 392.5 299 63.9
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 7.1e-107 391.3 250 75.6
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.1e-106 389.8 289 65.7
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 5.6e-104 381.7 253 68.0
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 1.8e-102 376.7 251 67.3
MBI02_g22115_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 3.4e-101 372.5 296 61.5
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.7e-98 362.8 190 88.9
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 5.1e-97 358.6 214 74.8
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 3.3e-96 355.9 191 86.9
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 3.1e-94 349.4 229 72.9
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.5e-88 330.5 227 70.9
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 1.3e-76 290.8 299 52.8
MBI16_g12297_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 2.5e-72 276.6 196 67.3
Sc03g0008620 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.3e-71 274.2 191 68.6
CAN.G337.128 Capsicum annuum HOM05D008272 ORTHO05D010429 5.3e-70 268.9 286 50.0
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 4.9e-68 262.3 247 57.1
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 9.6e-64 248.1 148 77.0
MD11G1219100 Malus domestica HOM05D008272 ORTHO05D010429 1.1e-56 224.6 290 44.8
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.1e-56 224.6 137 77.4
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 1.1e-48 198.0 115 78.3
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 9.7e-48 194.9 114 78.9
Cfa020968 Carpinus fangiana HOM05D008272 ORTHO05D010429 1.2e-24 118.2 62 80.6
Oeu020117.1 Olea europaea HOM05D008272 ORTHO05D010429 7.5e-24 115.5 114 51.8
MD03G1201900 Malus domestica HOM05D008272 ORTHO05D010429 1.6e-18 97.8 58 75.9
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 7.5e-16 89.0 213 30.0
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 7.5e-16 89.0 195 31.3
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 1.3e-15 88.2 215 30.2
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 1.7e-15 87.8 162 34.0
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 1.7e-15 87.8 160 34.4
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 1.7e-15 87.8 184 32.6
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 2.8e-15 87.0 148 33.8
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 3.7e-15 86.7 184 33.7
arahy.Tifrunner.gnm1.ann1.39PYJI Arachis hypogaea HOM05D008272 ORTHO05D010429 4.9e-15 86.3 109 43.1
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 4.9e-15 86.3 216 30.6
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 4.9e-15 86.3 244 27.9
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.4e-14 84.7 222 29.3
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 2.4e-14 84.0 188 32.4
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 2.4e-14 84.0 156 31.4
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 2.4e-14 84.0 168 31.5
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.1e-14 83.2 170 32.9
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 4.1e-14 83.2 150 30.7
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 5.4e-14 82.8 134 35.8
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 7.0e-14 82.4 185 33.0
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 7.0e-14 82.4 184 30.4
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 7.0e-14 82.4 279 28.0
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 7.0e-14 82.4 147 34.7
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 9.1e-14 82.0 134 35.1
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 9.1e-14 82.0 134 35.1
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 9.1e-14 82.0 151 32.5
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 9.1e-14 82.0 131 34.4
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 9.1e-14 82.0 157 32.5
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 9.1e-14 82.0 131 34.4
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 9.1e-14 82.0 229 28.4
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.2e-13 81.6 227 29.5
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 1.2e-13 81.6 134 35.1
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.2e-13 81.6 134 35.1
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 1.2e-13 81.6 134 35.1
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.2e-13 81.6 216 30.1
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 1.2e-13 81.6 146 34.2
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.6e-13 81.3 131 35.1
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.6e-13 81.3 131 35.1
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.6e-13 81.3 192 32.3
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.6e-13 81.3 193 31.6
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.6e-13 81.3 188 31.4
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.0e-13 80.9 136 33.8
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 2.0e-13 80.9 169 32.0
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.0e-13 80.9 184 31.0
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 2.0e-13 80.9 191 30.4
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.7e-13 80.5 131 33.6
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 2.7e-13 80.5 192 31.8
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 2.7e-13 80.5 131 34.4
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.7e-13 80.5 132 36.4
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 2.7e-13 80.5 134 35.1
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 3.5e-13 80.1 192 31.2
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 3.5e-13 80.1 188 32.4
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 3.5e-13 80.1 188 29.8
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 4.5e-13 79.7 157 31.8
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 4.5e-13 79.7 126 34.1
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 4.5e-13 79.7 156 32.7
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 5.9e-13 79.3 193 30.1
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 5.9e-13 79.3 119 36.1
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 5.9e-13 79.3 189 29.6
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 5.9e-13 79.3 131 33.6
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 7.7e-13 79.0 209 28.7
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 7.7e-13 79.0 184 30.4
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 7.7e-13 79.0 191 29.8
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.0e-12 78.6 145 34.5
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.0e-12 78.6 147 31.3
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.3e-12 78.2 197 32.0
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.3e-12 78.2 131 34.4
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.3e-12 78.2 131 32.8
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.3e-12 78.2 131 32.8
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.3e-12 78.2 131 32.8
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.7e-12 77.8 197 32.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 1.7e-12 77.8 184 29.3
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.7e-12 77.8 119 34.5
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 1.7e-12 77.8 157 31.2
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.7e-12 77.8 145 34.5
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 2.3e-12 77.4 184 29.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.3e-12 77.4 131 32.8
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.3e-12 77.4 145 33.8
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.3e-12 77.4 136 33.8
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.3e-12 77.4 191 29.8
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 2.9e-12 77.0 192 29.2
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.9e-12 77.0 126 33.3
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 2.9e-12 77.0 161 28.6
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 2.9e-12 77.0 190 30.0
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.9e-12 77.0 119 34.5
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 3.8e-12 76.6 145 30.3
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.8e-12 76.6 126 32.5
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 3.8e-12 76.6 126 32.5
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 3.8e-12 76.6 126 34.1
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 3.8e-12 76.6 131 33.6
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 3.8e-12 76.6 190 29.5
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 5.0e-12 76.3 189 29.1
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 5.0e-12 76.3 213 28.2
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 5.0e-12 76.3 189 30.2
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 5.0e-12 76.3 189 30.2
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 6.6e-12 75.9 189 29.1
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 6.6e-12 75.9 126 31.0
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 6.6e-12 75.9 189 29.1
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 6.6e-12 75.9 183 28.4
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 6.6e-12 75.9 184 31.0
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 8.6e-12 75.5 119 33.6
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 1.1e-11 75.1 127 32.3
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.5e-11 74.7 212 28.3
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.9e-11 74.3 227 26.9
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.5e-11 73.9 222 26.6
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 3.3e-11 73.6 183 29.5
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 3.3e-11 73.6 225 27.6
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 5.6e-11 72.8 188 28.2
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 7.2e-11 72.4 183 30.1
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 9.5e-11 72.0 126 31.7
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 9.5e-11 72.0 126 32.5
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 9.5e-11 72.0 119 32.8
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.6e-10 71.2 191 29.3
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 2.1e-10 70.9 246 27.2
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 8.0e-10 68.9 132 33.3
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 4.0e-09 66.6 131 29.8
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 8.9e-09 65.5 155 29.0
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 3.4e-08 63.5 210 26.2
PGR083G2363 Punica granatum HOM05D003844 ORTHO05D004534 3.2e-06 57.0 175 27.4
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 4.1e-06 56.6 105 30.5
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 7.0e-06 55.8 48 52.1


User provided reference genes

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