Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 8.5e-201 703.4 332 100.0
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 1.7e-156 556.2 319 79.3
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 2.2e-156 555.8 324 75.9
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 8.3e-156 553.9 319 77.7
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 1.1e-155 553.5 324 75.6
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 3.2e-155 552.0 319 78.4
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 5.4e-155 551.2 320 76.2
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 3.5e-154 548.5 327 76.1
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 6.0e-154 547.7 318 76.7
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 7.8e-154 547.4 319 77.1
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 7.8e-154 547.4 324 76.5
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 7.8e-154 547.4 324 76.9
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 8.6e-153 543.9 318 75.8
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 1.5e-152 543.1 318 76.7
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 1.6e-151 539.7 321 74.8
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 2.8e-151 538.9 318 76.1
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 3.6e-151 538.5 319 75.5
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 1.1e-150 537.0 318 74.8
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 1.4e-150 536.6 320 75.0
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 1.8e-150 536.2 321 73.5
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 1.8e-150 536.2 319 74.9
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 5.2e-150 534.6 321 76.3
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 6.8e-150 534.3 321 76.0
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 6.8e-150 534.3 319 75.2
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 1.2e-149 533.5 319 74.6
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.5e-149 533.1 321 76.0
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 2.0e-149 532.7 318 75.2
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 2.0e-149 532.7 320 74.4
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 7.6e-149 530.8 320 75.3
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 1.3e-148 530.0 319 74.3
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.7e-148 529.6 322 73.9
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 1.7e-148 529.6 319 74.3
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 2.9e-148 528.9 319 75.2
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 8.4e-148 527.3 316 76.3
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 1.4e-147 526.6 321 74.1
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 2.4e-147 525.8 319 74.0
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 2.4e-147 525.8 319 72.7
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 7.1e-147 524.2 320 73.4
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 1.6e-146 523.1 321 72.3
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 2.1e-146 522.7 321 71.3
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 3.5e-146 521.9 323 71.8
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 3.5e-146 521.9 319 73.0
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 3.5e-146 521.9 319 74.3
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 3.5e-146 521.9 321 73.8
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 4.6e-146 521.5 318 73.0
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 4.6e-146 521.5 320 72.8
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 4.6e-146 521.5 321 73.5
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 7.8e-146 520.8 315 72.7
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.0e-145 520.4 311 74.0
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 1.0e-145 520.4 321 73.5
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 1.3e-145 520.0 318 74.2
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 3.0e-145 518.8 318 72.6
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.9e-145 518.5 315 73.0
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 3.9e-145 518.5 319 70.8
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 6.6e-145 517.7 321 71.7
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 6.6e-145 517.7 320 72.8
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 8.6e-145 517.3 315 72.4
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 8.6e-145 517.3 321 72.6
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 3.3e-144 515.4 312 73.4
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 5.6e-144 514.6 321 72.3
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 5.6e-144 514.6 321 72.3
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 7.3e-144 514.2 319 73.7
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 9.6e-144 513.8 319 73.4
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 9.6e-144 513.8 322 72.0
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 9.6e-144 513.8 321 73.2
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 1.2e-143 513.5 308 74.0
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 2.8e-143 512.3 320 73.1
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 2.8e-143 512.3 307 75.6
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 3.6e-143 511.9 321 70.7
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.2e-143 511.1 320 72.5
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.4e-142 510.0 319 73.4
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 2.4e-142 509.2 320 72.5
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 4.0e-142 508.4 329 69.9
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 5.2e-142 508.1 322 68.3
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 5.2e-142 508.1 319 72.1
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 6.9e-142 507.7 318 70.8
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 6.9e-142 507.7 307 75.6
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 9.0e-142 507.3 307 74.6
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 2.6e-141 505.8 315 72.4
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 4.4e-141 505.0 309 74.8
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.3e-140 503.4 322 70.2
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.7e-140 503.1 310 71.3
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.7e-140 503.1 321 70.1
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.9e-140 502.3 315 70.8
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 4.9e-140 501.5 315 71.4
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 8.4e-140 500.7 308 73.1
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 2.1e-138 496.1 309 71.5
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 2.1e-138 496.1 320 70.9
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 2.7e-138 495.7 326 68.1
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 2.7e-138 495.7 306 71.2
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 6.0e-138 494.6 315 69.5
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 6.0e-138 494.6 318 69.5
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 1.0e-137 493.8 318 72.6
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.3e-137 493.4 310 70.6
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.3e-137 492.7 308 71.4
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 2.3e-137 492.7 322 69.3
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 1.5e-136 490.0 316 68.7
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 4.3e-136 488.4 317 67.5
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 9.6e-136 487.3 321 69.5
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 1.6e-135 486.5 315 68.6
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 3.6e-135 485.3 316 68.0
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 3.6e-135 485.3 318 68.2
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 4.8e-135 485.0 306 71.2
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 1.4e-134 483.4 315 67.9
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.4e-134 483.4 312 67.9
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 5.3e-134 481.5 319 65.2
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 6.9e-134 481.1 315 67.6
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 9.0e-134 480.7 310 68.1
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 5.8e-133 478.0 322 67.4
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 5.8e-133 478.0 305 66.2
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 1.3e-132 476.9 322 66.8
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.7e-132 476.5 289 74.0
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.7e-132 476.5 295 71.2
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 2.2e-132 476.1 322 66.5
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 4.9e-132 474.9 322 67.4
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.4e-132 474.6 288 74.3
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 1.1e-131 473.8 319 63.9
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.4e-131 473.4 315 66.0
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 6.0e-130 468.0 319 65.8
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.0e-129 467.2 306 65.4
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.9e-128 463.0 318 65.1
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 9.9e-125 450.7 312 66.0
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 3.8e-124 448.7 322 64.9
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 4.9e-124 448.4 317 63.4
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 8.4e-124 447.6 275 70.9
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 6.2e-119 431.4 283 67.8
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 1.1e-118 430.6 312 62.2
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 4.0e-118 428.7 309 61.8
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.3e-118 428.3 282 69.9
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 4.5e-117 425.2 308 57.8
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 5.8e-117 424.9 315 63.2
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 5.8e-117 424.9 318 57.9
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 8.7e-113 411.0 320 58.8
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 9.0e-110 401.0 308 56.8
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.9e-107 393.3 321 58.6
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.9e-107 393.3 321 58.6
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 5.1e-105 385.2 305 55.1
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 7.4e-104 381.3 226 73.9
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 2.8e-103 379.4 217 75.1
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 8.2e-103 377.9 301 61.5
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 3.1e-94 349.4 307 54.4
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 3.2e-91 339.3 309 50.5
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 2.0e-80 303.5 274 56.2
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 7.0e-70 268.5 173 67.6
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.8e-68 262.7 316 44.0
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.0e-60 238.0 261 46.7
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 1.5e-51 207.6 134 73.9
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 8.9e-49 198.4 126 64.3
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 3.0e-44 183.3 312 33.3
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.6e-42 177.6 117 68.4
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 2.7e-37 160.2 330 30.0
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 8.9e-33 145.2 234 37.2
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 1.0e-28 131.7 348 27.9
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 2.5e-27 127.1 95 54.7
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 2.7e-13 80.5 74 54.1
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 3.0e-12 77.0 58 63.8


User provided reference genes

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