Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 3.2e-110 401.7 199 100.0
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 2.9e-87 325.5 195 79.0
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.9e-87 325.5 195 79.0
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.9e-87 325.5 195 77.9
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 2.9e-87 325.5 197 78.7
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.9e-86 322.8 197 77.7
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 3.2e-86 322.0 198 77.8
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 3.2e-86 322.0 195 77.4
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 7.1e-86 320.9 198 77.8
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 7.1e-86 320.9 198 77.8
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 3.5e-85 318.5 197 76.1
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 3.3e-83 312.0 197 73.1
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 3.3e-83 312.0 190 76.8
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 7.4e-83 310.8 196 70.9
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.3e-82 310.1 190 76.3
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.3e-82 310.1 190 76.3
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.1e-82 309.3 213 71.4
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 4.8e-82 308.1 195 73.3
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.4e-81 306.6 190 76.8
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 1.4e-81 306.6 196 74.0
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 2.4e-81 305.8 197 74.1
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 3.1e-81 305.4 197 75.6
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 9.0e-81 303.9 191 72.3
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 1.2e-80 303.5 194 73.7
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 7.6e-80 300.8 192 74.0
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 7.6e-80 300.8 191 75.9
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 1.7e-79 299.7 191 72.8
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 1.7e-79 299.7 195 70.3
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 2.2e-79 299.3 198 71.2
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 3.8e-79 298.5 193 72.0
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 6.5e-79 297.7 196 70.4
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 6.5e-79 297.7 196 70.9
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 8.4e-79 297.4 195 73.3
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 2.5e-78 295.8 198 70.7
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 2.5e-78 295.8 197 72.1
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 5.5e-78 294.7 198 69.2
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 1.2e-77 293.5 195 70.3
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 2.1e-77 292.7 199 68.8
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 2.7e-77 292.4 198 71.7
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 3.5e-77 292.0 194 68.6
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 3.5e-77 292.0 197 72.1
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 6.0e-77 291.2 197 68.5
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 6.0e-77 291.2 197 68.5
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 7.9e-77 290.8 197 69.0
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 7.9e-77 290.8 197 69.0
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 7.9e-77 290.8 197 70.1
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 3.0e-76 288.9 198 66.2
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 5.1e-76 288.1 198 69.2
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 6.7e-76 287.7 194 67.5
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 1.1e-75 287.0 197 67.0
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 1.9e-75 286.2 166 82.5
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 1.9e-75 286.2 197 66.0
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 2.5e-75 285.8 197 68.0
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 2.5e-75 285.8 195 69.2
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 4.3e-75 285.0 197 67.5
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 4.3e-75 285.0 191 68.1
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 4.3e-75 285.0 196 66.3
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 4.3e-75 285.0 196 67.9
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 5.7e-75 284.6 197 66.5
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 5.7e-75 284.6 167 79.6
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 7.4e-75 284.3 192 68.2
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 4.8e-74 281.6 190 68.4
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 1.1e-73 280.4 198 67.2
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 1.4e-73 280.0 190 66.8
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 3.1e-73 278.9 192 68.2
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 3.1e-73 278.9 190 68.4
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 4.1e-73 278.5 197 69.0
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 6.9e-73 277.7 190 66.8
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 9.0e-73 277.3 166 78.3
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 2.6e-72 275.8 199 64.3
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 2.6e-72 275.8 199 65.8
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 5.9e-72 274.6 190 66.8
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 6.5e-71 271.2 186 67.2
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 2.5e-70 269.2 197 64.0
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 3.2e-70 268.9 184 67.4
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 7.2e-70 267.7 185 66.5
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 1.6e-69 266.5 197 64.0
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 1.8e-68 263.1 201 62.7
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 3.9e-68 261.9 191 63.4
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 1.1e-67 260.4 167 73.7
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 7.4e-67 257.7 167 70.1
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 7.4e-67 257.7 192 60.9
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 1.3e-66 256.9 154 76.0
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 2.4e-65 252.7 165 69.7
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.0e-64 249.6 196 60.2
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 3.4e-64 248.8 194 60.3
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.4e-64 248.8 166 72.9
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 7.2e-62 241.1 192 54.2
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 9.4e-62 240.7 194 60.3
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 1.2e-61 240.4 163 67.5
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 1.0e-60 237.3 197 63.5
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 3.0e-60 235.7 166 69.3
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 6.7e-60 234.6 219 53.4
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 1.4e-57 226.9 192 57.8
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.9e-55 219.2 132 75.8
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.9e-55 219.2 132 75.8
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 5.2e-52 208.4 198 51.0
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 1.7e-50 203.4 132 68.2
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 1.2e-48 197.2 194 44.8
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 4.5e-48 195.3 171 59.1
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 7.7e-48 194.5 194 46.4
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 3.2e-46 189.1 191 47.1
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 1.2e-45 187.2 190 51.1
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 8.8e-44 181.0 196 47.4
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 2.2e-42 176.4 107 74.8
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 6.1e-37 158.3 92 78.3
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 2.0e-35 153.3 269 37.2
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 8.3e-34 147.9 217 36.4
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 7.7e-32 141.4 81 81.5
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 4.0e-28 129.0 90 65.6
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 1.7e-26 123.6 109 55.0
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 1.9e-22 110.2 104 52.9
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 2.5e-22 109.8 177 32.8
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 5.6e-22 108.6 77 62.3
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 3.3e-14 82.8 226 29.2
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 1.4e-12 77.4 117 35.0
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 3.1e-12 76.3 58 55.2
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 1.2e-11 74.3 47 74.5
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 1.2e-11 74.3 62 59.7
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 2.6e-11 73.2 55 60.0
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 2.6e-11 73.2 61 52.5


User provided reference genes

Program Settings