Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc95.54 Carica papaya HOM05D006247 ORTHO05D007684 8.4e-66 253.4 120 100.0
Thecc.09G172600 Theobroma cacao HOM05D006247 ORTHO05D007684 7.4e-30 134.0 114 51.8
Duzib168G0886 Durio zibethinus HOM05D006247 ORTHO05D007684 5.3e-28 127.9 95 56.8
Potri.006G168900 Populus trichocarpa HOM05D006247 ORTHO05D007684 9.1e-28 127.1 94 60.6
Ciclev10007836m.g Citrus clementina HOM05D006247 ORTHO05D007684 7.7e-27 124.0 94 59.6
Gorai.004G100200 Gossypium raimondii HOM05D006247 ORTHO05D007684 7.7e-27 124.0 95 54.7
Gohir.A08G084700 Gossypium hirsutum HOM05D006247 ORTHO05D007684 1.7e-26 122.9 95 54.7
Manes.14G152800 Manihot esculenta HOM05D006247 ORTHO05D007684 2.2e-26 122.5 94 58.5
Hma1.2p1_3184F.1_g333740 Hydrangea macrophylla HOM05D006247 ORTHO05D007684 2.9e-26 122.1 117 50.4
Ca_21220_v3 Cicer arietinum L. HOM05D006247 ORTHO05D007684 1.1e-25 120.2 95 57.9
TWI34G1331 Tripterygium wilfordii HOM05D006247 ORTHO05D007684 1.1e-25 120.2 91 59.3
TPR.G20696 Trifolium pratense HOM05D006247 ORTHO05D007684 1.5e-25 119.8 95 57.9
Gohir.D08G094300 Gossypium hirsutum HOM05D006247 ORTHO05D007684 2.5e-25 119.0 95 53.7
arahy.Tifrunner.gnm1.ann1.M2FXAD Arachis hypogaea HOM05D006247 ORTHO05D007684 4.2e-25 118.2 119 47.9
Prupe.1G086300 Prunus persica HOM05D006247 ORTHO05D007684 5.5e-25 117.9 118 46.6
Lalb_Chr12g0199361 Lupinus albus HOM05D006247 ORTHO05D007684 1.6e-24 116.3 116 45.7
VMungo1215G1070 Vigna mungo HOM05D006247 ORTHO05D007684 2.1e-24 115.9 95 54.7
arahy.Tifrunner.gnm1.ann1.B1Q0FL Arachis hypogaea HOM05D006247 ORTHO05D007684 2.7e-24 115.5 119 47.1
Glyma.17G063800 Glycine max HOM05D006247 ORTHO05D007684 3.6e-24 115.2 95 55.8
Psat4g012560 Pisum sativum HOM05D006247 ORTHO05D007684 3.6e-24 115.2 94 57.4
FvH4_4g08310 Fragaria vesca HOM05D006247 ORTHO05D007684 6.1e-24 114.4 95 56.8
FAN07G1589 Fragaria x ananassa HOM05D006247 ORTHO05D007684 8.0e-24 114.0 95 56.8
FAN17G2058 Fragaria x ananassa HOM05D006247 ORTHO05D007684 1.0e-23 113.6 95 55.8
Medtr4g128240 Medicago truncatula HOM05D006247 ORTHO05D007684 1.0e-23 113.6 95 54.7
Lj4g0017814 Lotus japonicus HOM05D006247 ORTHO05D007684 1.8e-23 112.8 116 47.4
RcHm_v2.0_Chr4g0402581 Rosa chinensis HOM05D006247 ORTHO05D007684 1.8e-23 112.8 95 55.8
CSS0031352 Camellia sinensis var. sinensis HOM05D006247 ORTHO05D007684 2.3e-23 112.5 100 53.0
Lj9A685T58 Lonicera japonica HOM05D006247 ORTHO05D007684 2.3e-23 112.5 96 56.2
QL02p097643 Quercus lobata HOM05D006247 ORTHO05D007684 2.3e-23 112.5 118 47.5
Atru.chr7.645 Acer truncatum HOM05D006247 ORTHO05D007684 3.0e-23 112.1 89 57.3
Phvul.003G146300 Phaseolus vulgaris HOM05D006247 ORTHO05D007684 4.0e-23 111.7 95 53.7
THA.LOC104803499 Tarenaya hassleriana HOM05D006247 ORTHO05D007684 5.2e-23 111.3 95 53.7
vmacro13121 Vaccinium macrocarpon HOM05D006247 ORTHO05D007684 6.7e-23 110.9 113 51.3
Peaxi162Scf00113g01818 Petunia axillaris HOM05D006247 ORTHO05D007684 1.2e-22 110.2 119 44.5
A07p01840 Brassica napus HOM05D006247 ORTHO05D007684 1.5e-22 109.8 96 53.1
BraA07t27984Z Brassica rapa HOM05D006247 ORTHO05D007684 2.6e-22 109.0 96 52.1
MD16G1258300 Malus domestica HOM05D006247 ORTHO05D007684 7.5e-22 107.5 118 44.1
Rhsim01G0005100 Rhododendron simsii HOM05D006247 ORTHO05D007684 7.5e-22 107.5 119 46.2
AL3G53100 Arabidopsis lyrata HOM05D006247 ORTHO05D007684 1.3e-21 106.7 116 44.0
Carub.0003s3308 Capsella rubella HOM05D006247 ORTHO05D007684 1.3e-21 106.7 116 44.8
Actinidia04160 Actinidia chinensis HOM05D006247 ORTHO05D007684 2.2e-21 105.9 115 44.3
ECA234G4502 Erigeron canadensis HOM05D006247 ORTHO05D007684 2.2e-21 105.9 94 51.1
CANSAT11G2703 Cannabis sativa HOM05D006247 ORTHO05D007684 3.7e-21 105.1 118 44.9
Haze_22104 Corylus avellana HOM05D006247 ORTHO05D007684 3.7e-21 105.1 118 45.8
Aa31LG8G15940 Aethionema arabicum HOM05D006247 ORTHO05D007684 4.8e-21 104.8 91 52.7
AT2G18850 Arabidopsis thaliana HOM05D006247 ORTHO05D007684 4.8e-21 104.8 116 43.1
C07p03920 Brassica napus HOM05D006247 ORTHO05D007684 4.8e-21 104.8 79 59.5
BolC7t40784H Brassica oleracea HOM05D006247 ORTHO05D007684 4.8e-21 104.8 79 59.5
BcaC06g36474 Brassica carinata HOM05D006247 ORTHO05D007684 1.1e-20 103.6 79 58.2
Oeu025222.1 Olea europaea HOM05D006247 ORTHO05D007684 1.4e-20 103.2 119 44.5
CARHR109410 Cardamine hirsuta HOM05D006247 ORTHO05D007684 2.4e-20 102.4 100 51.0
Sp3g32310 Schrenkiella parvula HOM05D006247 ORTHO05D007684 4.1e-20 101.7 116 42.2
PGR102G2305 Punica granatum HOM05D006247 ORTHO05D007684 7.0e-20 100.9 91 52.7
Eucgr.C02305 Eucalyptus grandis HOM05D006247 ORTHO05D007684 9.1e-20 100.5 115 45.2
Nitab4.5_0000018g0080 Nicotiana tabacum HOM05D006247 ORTHO05D007684 1.6e-19 99.8 101 48.5
Migut.K00244 Erythranthe guttata HOM05D006247 ORTHO05D007684 2.7e-19 99.0 89 51.7
HanXRQChr10g0308211 Helianthus annuus HOM05D006247 ORTHO05D007684 4.5e-19 98.2 92 50.0
Lsat_1_v5_gn_5_84660 Lactuca sativa HOM05D006247 ORTHO05D007684 4.5e-19 98.2 96 49.0
Solyc02g014520.4 Solanum lycopersicum HOM05D006247 ORTHO05D007684 4.5e-19 98.2 119 40.3
CiPaw.07G192000 Carya illinoinensis HOM05D006247 ORTHO05D007684 5.9e-19 97.8 116 44.8
Sopen02g003860 Solanum pennellii HOM05D006247 ORTHO05D007684 5.9e-19 97.8 120 41.7
ClCG11G012190 Citrullus lanatus HOM05D006247 ORTHO05D007684 7.7e-19 97.4 108 43.5
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 1.3e-18 96.7 96 47.9
Nitab4.5_0019045g0010 Nicotiana tabacum HOM05D006247 ORTHO05D007684 1.3e-18 96.7 101 46.5
Eucgr.L03644 Eucalyptus grandis HOM05D006247 ORTHO05D007684 1.7e-18 96.3 72 62.5
BcaB03g16669 Brassica carinata HOM05D006247 ORTHO05D007684 2.2e-18 95.9 78 56.4
Thhalv10001950m.g Eutrema salsugineum HOM05D006247 ORTHO05D007684 5.0e-18 94.7 76 59.2
PSO170G0820 Papaver somniferum HOM05D006247 ORTHO05D007684 6.5e-18 94.4 119 42.0
CsaV3_2G008340 Cucumis sativus L. HOM05D006247 ORTHO05D007684 2.5e-17 92.4 108 40.7
PSO017G3786 Papaver somniferum HOM05D006247 ORTHO05D007684 2.5e-17 92.4 115 41.7
Ah.09g229830 Amaranthus hybridus HOM05D006247 ORTHO05D007684 3.2e-17 92.0 89 50.6
Hund09028 Selenicereus undatus HOM05D006247 ORTHO05D007684 5.5e-17 91.3 84 54.8
SalBow1G0102 Salvia bowleyana HOM05D006247 ORTHO05D007684 9.4e-17 90.5 119 39.5
Sc18g0007480 Simmondsia chinensis HOM05D006247 ORTHO05D007684 9.4e-17 90.5 70 62.9
EL10Ac4g10218 Beta vulgaris HOM05D006247 ORTHO05D007684 2.1e-16 89.4 100 51.0
EL10Ac4g10223 Beta vulgaris HOM05D006247 ORTHO05D007684 2.1e-16 89.4 100 51.0
Sed0001652 Sechium edule HOM05D006247 ORTHO05D007684 2.7e-16 89.0 110 37.3
MSTRG.10736 Avicennia marina HOM05D006247 ORTHO05D007684 3.6e-16 88.6 90 44.4
MELO3C004030.2 Cucumis melo HOM05D006247 ORTHO05D007684 4.7e-16 88.2 104 40.4
Cc06_g13290 Coffea canephora HOM05D006247 ORTHO05D007684 8.0e-16 87.4 120 39.2
TPR.G5375 Trifolium pratense HOM05D006247 ORTHO05D007684 3.0e-15 85.5 62 59.7
EL10Ac8g18280 Beta vulgaris HOM05D006247 ORTHO05D007684 4.0e-15 85.1 115 45.2
TAR383G1025 Trochodendron aralioides HOM05D006247 ORTHO05D007684 4.0e-15 85.1 117 38.5
Dinv42726 Davidia involucrata HOM05D006247 ORTHO05D007684 6.8e-15 84.3 82 46.3
Dinv43375 Davidia involucrata HOM05D006247 ORTHO05D007684 6.8e-15 84.3 82 46.3
SGA_v2.0_scaffold12G06066 Striga asiatica HOM05D006247 ORTHO05D007684 1.2e-14 83.6 87 46.0
AUR62021296 Chenopodium quinoa HOM05D006247 ORTHO05D007684 3.4e-14 82.0 121 41.3
AUR62040315 Chenopodium quinoa HOM05D006247 ORTHO05D007684 3.4e-14 82.0 121 41.3
AUR62033213 Chenopodium quinoa HOM05D006247 ORTHO05D007684 7.5e-14 80.9 91 48.4
GSVIVG01029207001 Vitis vinifera HOM05D006247 ORTHO05D007684 7.5e-14 80.9 115 38.3
Nn2g12713 Nelumbo nucifera HOM05D006247 ORTHO05D007684 2.7e-11 72.4 94 44.7
Aqoxy7G02323 Aquilegia oxysepala HOM05D006247 ORTHO05D007684 3.5e-11 72.0 117 35.0
MBI14_g17363_MAGBIO Magnolia biondii HOM05D006247 ORTHO05D007684 2.3e-10 69.3 127 33.9
CDE05G3038 Ceratophyllum demersum HOM05D006247 ORTHO05D007684 4.2e-09 65.1 98 39.8
COL.COLO4_07069 Corchorus olitorius HOM05D006247 ORTHO05D007684 8.0e-08 60.8 95 35.8
Sabra06G0130300 Salix brachista HOM05D006247 ORTHO05D007684 5.7e-06 54.7 93 35.5


User provided reference genes

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