Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.3e-191 672.9 341 100.0
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 8.4e-119 431.0 348 67.2
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 3.5e-109 399.1 348 61.8
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 6.0e-109 398.3 342 63.2
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 9.6e-107 391.0 342 62.6
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.8e-105 386.7 347 62.0
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.8e-105 386.7 349 61.0
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.4e-105 386.3 342 62.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.3e-103 380.6 345 60.6
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 4.9e-103 378.6 345 60.9
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 6.4e-103 378.3 337 60.5
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 6.4e-103 378.3 344 61.9
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 2.4e-102 376.3 351 61.3
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 3.2e-102 375.9 348 59.8
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.3e-100 370.5 295 67.5
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.3e-100 370.5 352 60.5
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 3.9e-100 369.0 350 59.4
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 6.7e-100 368.2 347 60.5
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 3.3e-99 365.9 343 60.1
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.6e-98 363.6 349 60.2
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.1e-98 363.2 348 58.3
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 2.1e-98 363.2 348 60.3
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 3.7e-98 362.5 375 55.7
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.8e-98 362.1 350 60.3
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.8e-98 362.1 347 59.7
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 2.6e-96 356.3 348 58.6
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 3.4e-96 355.9 344 57.3
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 4.5e-96 355.5 347 59.9
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 4.5e-96 355.5 347 59.9
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.7e-95 353.6 346 59.2
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.7e-95 353.6 346 59.2
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 2.2e-95 353.2 351 55.8
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 6.5e-95 351.7 354 57.6
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.1e-94 350.9 361 56.2
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.4e-94 350.5 351 58.4
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 4.2e-94 349.0 346 57.5
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 5.5e-94 348.6 333 59.8
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 7.1e-94 348.2 246 71.1
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.3e-92 344.0 351 55.8
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 1.8e-92 343.6 342 57.3
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 7.4e-91 338.2 347 54.8
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 2.1e-90 336.7 349 56.4
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 6.3e-90 335.1 347 53.9
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.4e-89 334.0 342 56.4
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 1.4e-89 334.0 329 59.0
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 6.9e-89 331.6 340 53.8
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.5e-88 328.9 338 55.3
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 5.0e-87 325.5 348 53.2
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 1.1e-86 324.3 269 62.1
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.1e-86 324.3 382 52.4
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.2e-85 320.9 214 73.8
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 7.9e-85 318.2 334 53.6
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.8e-84 317.0 349 50.4
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.9e-84 315.8 224 71.4
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 5.1e-84 315.5 260 64.2
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 5.1e-84 315.5 336 53.3
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.1e-83 314.3 342 53.2
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 1.6e-82 310.5 324 54.6
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 1.6e-82 310.5 231 68.4
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 3.7e-82 309.3 320 55.0
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 4.8e-82 308.9 387 47.5
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.1e-81 307.8 325 55.1
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 2.0e-80 303.5 322 52.5
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.6e-80 303.1 312 56.4
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 5.9e-80 302.0 223 67.7
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 1.7e-79 300.4 316 53.8
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 2.2e-79 300.1 299 53.2
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 3.8e-79 299.3 212 68.9
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 8.5e-79 298.1 344 50.6
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.1e-78 297.7 344 49.4
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 5.5e-78 295.4 320 53.1
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.4e-76 290.8 324 52.5
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.8e-76 290.4 358 48.0
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 3.9e-76 289.3 345 50.7
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.1e-75 287.7 237 62.9
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 4.8e-74 282.3 209 66.5
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.8e-74 282.3 347 48.7
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.5e-72 275.8 344 47.4
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.0e-71 274.6 223 65.5
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.7e-71 273.9 237 59.5
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 4.2e-70 269.2 357 46.2
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 2.3e-68 263.5 346 46.2
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.2e-68 262.3 304 49.0
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.6e-67 260.0 225 61.8
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 7.4e-67 258.5 231 60.2
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-66 257.7 345 45.8
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.3e-66 257.7 211 60.2
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.9e-64 248.8 339 45.7
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.2e-62 242.7 253 49.0
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 4.7e-61 239.2 233 52.4
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 4.7e-61 239.2 317 45.1
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 7.5e-59 231.9 319 43.3
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.7e-58 230.7 211 59.7
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 1.2e-56 224.6 341 43.4
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.0e-56 223.8 341 43.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 7.7e-56 221.9 259 49.8
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 1.5e-54 217.6 221 51.1
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.6e-53 214.2 133 81.2
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 6.1e-53 212.2 211 49.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.0e-53 211.8 355 41.1
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 4.0e-52 209.5 193 57.5
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.6e-51 206.8 202 54.5
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 9.8e-51 204.9 232 48.7
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 4.8e-50 202.6 354 41.0
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 8.3e-50 201.8 338 39.3
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 3.1e-49 199.9 357 40.1
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 3.8e-47 193.0 248 47.2
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 5.5e-46 189.1 124 75.8
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 2.8e-45 186.8 246 47.2
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.3e-44 183.7 265 44.9
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 3.0e-44 183.3 253 44.3
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 4.0e-44 183.0 352 40.9
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 8.8e-44 181.8 250 43.6
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.2e-43 181.4 159 58.5
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 6.3e-42 175.6 279 40.5
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.1e-41 172.9 272 41.9
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 4.1e-41 172.9 133 66.2
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 5.4e-41 172.6 247 44.5
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.2e-40 171.4 171 57.3
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 2.0e-40 170.6 221 42.5
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 2.7e-40 170.2 196 45.9
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.9e-38 164.1 203 46.8
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.2e-37 161.4 324 37.7
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.6e-37 159.8 259 42.1
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.3e-36 157.1 290 39.3
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 6.8e-36 155.6 323 36.5
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.5e-35 154.5 149 55.7
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 9.8e-35 151.8 251 38.2
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.4e-34 149.1 248 41.1
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 1.4e-33 147.9 259 38.2
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 5.4e-33 146.0 121 63.6
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 2.7e-32 143.7 114 63.2
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.5e-32 143.3 101 70.3
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.7e-31 141.0 217 42.4
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 8.6e-31 138.7 206 38.8
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.5e-30 137.9 93 71.0
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 3.1e-28 130.2 172 46.5
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.5e-27 127.9 73 83.6
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 2.2e-26 124.0 76 80.3
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.9e-26 122.9 117 48.7
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 2.8e-21 107.1 73 69.9
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.3e-18 98.2 258 34.1
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 4.6e-16 89.7 73 64.4
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.3e-15 87.4 88 56.8
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-15 87.0 128 37.5
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 6.2e-13 79.3 162 35.2
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.5e-11 74.7 43 79.1
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 1.0e-07 62.0 41 61.0
MELO3C034996.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.5e-06 58.2 39 71.8


User provided reference genes

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