Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc94.52 Carica papaya HOM05D004083 ORTHO05D005029 1.8e-90 336.3 214 100.0
Prupe.5G204600 Prunus persica HOM05D004083 ORTHO05D005029 2.6e-25 119.8 212 40.6
CiPaw.11G052900 Carya illinoinensis HOM05D004083 ORTHO05D005029 9.8e-25 117.9 218 42.2
Potri.009G018400 Populus trichocarpa HOM05D004083 ORTHO05D005029 2.1e-22 110.2 211 39.3
Atru.chr9.431 Acer truncatum HOM05D004083 ORTHO05D005029 4.6e-22 109.0 216 40.3
Rhsim08G0146200 Rhododendron simsii HOM05D004083 ORTHO05D005029 4.6e-22 109.0 216 40.3
Gohir.A12G182366 Gossypium hirsutum HOM05D004083 ORTHO05D005029 2.3e-21 106.7 214 38.3
arahy.Tifrunner.gnm1.ann1.UN52J1 Arachis hypogaea HOM05D004083 ORTHO05D005029 3.9e-21 105.9 211 38.9
Ciclev10019373m.g Citrus clementina HOM05D004083 ORTHO05D005029 5.1e-21 105.5 219 39.7
Duzib205G0149 Durio zibethinus HOM05D004083 ORTHO05D005029 1.1e-20 104.4 214 36.9
TWI15G0273 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 1.5e-20 104.0 206 38.8
Dinv22784 Davidia involucrata HOM05D004083 ORTHO05D005029 2.5e-20 103.2 215 37.7
Manes.06G085000 Manihot esculenta HOM05D004083 ORTHO05D005029 2.5e-20 103.2 214 39.3
Phvul.003G185100 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 7.3e-20 101.7 211 39.8
Oeu042728.1 Olea europaea HOM05D004083 ORTHO05D005029 3.6e-19 99.4 217 35.0
Thecc.03G101200 Theobroma cacao HOM05D004083 ORTHO05D005029 4.7e-19 99.0 214 36.0
vmacro17608 Vaccinium macrocarpon HOM05D004083 ORTHO05D005029 8.1e-19 98.2 220 35.0
MD06G1202400 Malus domestica HOM05D004083 ORTHO05D005029 1.1e-18 97.8 100 56.0
Lalb_Chr13g0302881 Lupinus albus HOM05D004083 ORTHO05D005029 1.8e-18 97.1 217 38.7
PGR083G0930 Punica granatum HOM05D004083 ORTHO05D005029 4.0e-18 95.9 213 36.2
arahy.Tifrunner.gnm1.ann1.9WPU3R Arachis hypogaea HOM05D004083 ORTHO05D005029 1.5e-17 94.0 211 36.5
Eucgr.B00587 Eucalyptus grandis HOM05D004083 ORTHO05D005029 3.4e-17 92.8 213 34.7
COL.COLO4_06863 Corchorus olitorius HOM05D004083 ORTHO05D005029 4.4e-17 92.4 214 35.0
Gohir.D12G185400 Gossypium hirsutum HOM05D004083 ORTHO05D005029 9.9e-17 91.3 214 35.0
Gorai.008G198800 Gossypium raimondii HOM05D004083 ORTHO05D005029 1.3e-16 90.9 214 35.0
MD14G1211500 Malus domestica HOM05D004083 ORTHO05D005029 2.9e-16 89.7 95 55.8
QL10p019423 Quercus lobata HOM05D004083 ORTHO05D005029 3.8e-16 89.4 72 66.7
TAR264G0004 Trochodendron aralioides HOM05D004083 ORTHO05D005029 1.4e-15 87.4 225 34.2
Ca_21778_v3 Cicer arietinum L. HOM05D004083 ORTHO05D005029 2.4e-15 86.7 200 37.5
Hma1.2p1_0060F.1_g033140 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 3.2e-15 86.3 94 52.1
Lj4g0020958 Lotus japonicus HOM05D004083 ORTHO05D005029 3.2e-15 86.3 181 40.3
Sabra09G0010400 Salix brachista HOM05D004083 ORTHO05D005029 9.2e-15 84.7 261 32.6
Solyc03g115140.4 Solanum lycopersicum HOM05D004083 ORTHO05D005029 9.2e-15 84.7 218 35.8
Cc00_g07590 Coffea canephora HOM05D004083 ORTHO05D005029 1.6e-14 84.0 215 34.9
MSTRG.9600 Avicennia marina HOM05D004083 ORTHO05D005029 2.1e-14 83.6 216 34.3
Peaxi162Scf00201g00248 Petunia axillaris HOM05D004083 ORTHO05D005029 2.7e-14 83.2 219 32.9
Sopen03g034200 Solanum pennellii HOM05D004083 ORTHO05D005029 2.7e-14 83.2 231 35.1
THA.LOC104812102 Tarenaya hassleriana HOM05D004083 ORTHO05D005029 2.7e-14 83.2 199 37.2
Hma1.2p1_0060F.1_g033150 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 3.5e-14 82.8 77 55.8
Hund02589 Selenicereus undatus HOM05D004083 ORTHO05D005029 4.6e-14 82.4 215 33.0
Glyma.17G078100 Glycine max HOM05D004083 ORTHO05D005029 6.0e-14 82.0 229 36.2
FAN13G2878 Fragaria x ananassa HOM05D004083 ORTHO05D005029 7.8e-14 81.6 76 61.8
Lsat_1_v5_gn_5_22480 Lactuca sativa HOM05D004083 ORTHO05D005029 1.3e-13 80.9 96 52.1
Oeu014402.1 Olea europaea HOM05D004083 ORTHO05D005029 1.7e-13 80.5 215 32.6
TPR.G2055 Trifolium pratense HOM05D004083 ORTHO05D005029 1.7e-13 80.5 215 35.8
RcHm_v2.0_Chr7g0183041 Rosa chinensis HOM05D004083 ORTHO05D005029 2.3e-13 80.1 188 38.3
Glyma.05G021300 Glycine max HOM05D004083 ORTHO05D005029 3.9e-13 79.3 232 34.9
CsaV3_1G002890 Cucumis sativus L. HOM05D004083 ORTHO05D005029 5.1e-13 79.0 214 33.2
AT1G74250 Arabidopsis thaliana HOM05D004083 ORTHO05D005029 1.5e-12 77.4 241 34.0
Nn3g17443 Nelumbo nucifera HOM05D004083 ORTHO05D005029 1.9e-12 77.0 206 32.5
Migut.D01668 Erythranthe guttata HOM05D004083 ORTHO05D005029 2.5e-12 76.6 216 38.9
AL2G34130 Arabidopsis lyrata HOM05D004083 ORTHO05D005029 5.6e-12 75.5 234 34.6
Carub.0002s2104 Capsella rubella HOM05D004083 ORTHO05D005029 9.6e-12 74.7 220 33.2
MBI19_g37728_MAGBIO Magnolia biondii HOM05D004083 ORTHO05D005029 1.2e-11 74.3 214 33.6
Thhalv10018249m.g Eutrema salsugineum HOM05D004083 ORTHO05D005029 2.8e-11 73.2 223 34.1
Psat0s3618g0080 Pisum sativum HOM05D004083 ORTHO05D005029 4.7e-11 72.4 200 45.5
SGA_v2.0_scaffold42G16038 Striga asiatica HOM05D004083 ORTHO05D005029 4.7e-11 72.4 227 32.2
CARHR067510 Cardamine hirsuta HOM05D004083 ORTHO05D005029 6.2e-11 72.0 225 36.0
Sp5g29430 Schrenkiella parvula HOM05D004083 ORTHO05D005029 6.2e-11 72.0 220 33.2
PGSC0003DMG400024541 Solanum tuberosum HOM05D004083 ORTHO05D005029 1.1e-10 71.2 223 32.7
AUR62008522 Chenopodium quinoa HOM05D004083 ORTHO05D005029 1.4e-10 70.9 222 31.1
Aqoxy3G03641 Aquilegia oxysepala HOM05D004083 ORTHO05D005029 2.4e-10 70.1 214 31.3
Ah.11g047840 Amaranthus hybridus HOM05D004083 ORTHO05D005029 3.1e-10 69.7 194 33.5
Nitab4.5_0012564g0020 Nicotiana tabacum HOM05D004083 ORTHO05D005029 3.1e-10 69.7 226 32.7
FvH4_5g13920 Fragaria vesca HOM05D004083 ORTHO05D005029 4.0e-10 69.3 76 53.9
ClCG06G015670 Citrullus lanatus HOM05D004083 ORTHO05D005029 6.9e-10 68.6 86 47.7
Medtr4g109510 Medicago truncatula HOM05D004083 ORTHO05D005029 6.9e-10 68.6 208 33.2
CAN.G1228.28 Capsicum annuum HOM05D004083 ORTHO05D000105 8.9e-10 68.2 220 30.9
Lj5C102T12 Lonicera japonica HOM05D004083 ORTHO05D005029 8.9e-10 68.2 235 30.6
HanXRQChr16g0502431 Helianthus annuus HOM05D004083 ORTHO05D005029 2.0e-09 67.0 87 47.1
PSO478G3647 Papaver somniferum HOM05D004083 ORTHO05D005029 3.4e-09 66.2 217 34.6
FAN08G2807 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.4e-09 65.9 200 36.5
EL10Ac5g11124 Beta vulgaris HOM05D004083 ORTHO05D005029 5.8e-09 65.5 219 30.1
PSO017G0790 Papaver somniferum HOM05D004083 ORTHO05D005029 1.3e-08 64.3 216 33.8
Sed0001011 Sechium edule HOM05D004083 ORTHO05D005029 2.2e-08 63.5 80 50.0
Aa31LG4G4540 Aethionema arabicum HOM05D004083 ORTHO05D005029 3.8e-08 62.8 79 50.6
Sc04g0004330 Simmondsia chinensis HOM05D004083 ORTHO05D005029 6.4e-08 62.0 214 30.4
BcaB05g24846 Brassica carinata HOM05D004083 ORTHO05D005029 1.1e-07 61.2 224 33.5
A02p19220 Brassica napus HOM05D004083 ORTHO05D005029 1.9e-07 60.5 211 31.8
AUR62021567 Chenopodium quinoa HOM05D004083 ORTHO05D005029 1.2e-06 57.8 233 29.6
CDE04G1128 Ceratophyllum demersum HOM05D004083 ORTHO05D005029 2.1e-06 57.0 214 29.0
BcaC03g15497 Brassica carinata HOM05D004083 ORTHO05D005029 2.7e-06 56.6 36 72.2
C06p33480 Brassica napus HOM05D004083 ORTHO05D005029 3.5e-06 56.2 230 30.4
BolC6t38462H Brassica oleracea HOM05D004083 ORTHO05D005029 3.5e-06 56.2 230 30.4


User provided reference genes

Program Settings