Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 5.4e-30 133.7 67 100.0
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 5.1e-20 100.5 67 76.1
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 2.5e-19 98.2 67 76.1
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 3.3e-19 97.8 67 74.6
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 4.3e-19 97.4 67 76.1
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 4.3e-19 97.4 68 76.5
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 1.3e-18 95.9 67 76.1
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 1.6e-18 95.5 68 75.0
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 3.6e-18 94.4 67 71.6
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 3.6e-18 94.4 67 71.6
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 3.6e-18 94.4 66 72.7
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 8.1e-18 93.2 65 72.3
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 8.1e-18 93.2 67 77.6
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 8.1e-18 93.2 67 77.6
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.4e-17 92.4 66 74.2
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.4e-17 92.4 68 73.5
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 1.8e-17 92.0 67 71.6
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 4.0e-17 90.9 68 72.1
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 5.3e-17 90.5 66 72.7
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 6.9e-17 90.1 68 73.5
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 6.9e-17 90.1 67 73.1
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 9.0e-17 89.7 66 77.3
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 1.2e-16 89.4 67 70.1
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.2e-16 89.4 67 70.1
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.5e-16 89.0 67 71.6
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 2.0e-16 88.6 68 70.6
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.6e-16 88.2 68 72.1
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 3.4e-16 87.8 67 70.1
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 5.8e-16 87.0 67 70.1
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 5.8e-16 87.0 67 70.1
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 5.8e-16 87.0 68 70.6
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 5.8e-16 87.0 67 70.1
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 1.3e-15 85.9 68 70.6
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.3e-15 85.9 68 70.6
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 1.3e-15 85.9 68 70.6
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 2.2e-15 85.1 65 70.8
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 2.2e-15 85.1 65 72.3
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 2.2e-15 85.1 65 69.2
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 2.9e-15 84.7 64 65.6
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 3.8e-15 84.3 64 65.6
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 4.9e-15 84.0 66 68.2
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 8.4e-15 83.2 67 68.7
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.1e-14 82.8 70 68.6
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 1.4e-14 82.4 65 69.2
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 1.9e-14 82.0 69 66.7
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 2.4e-14 81.6 67 65.7
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 3.2e-14 81.3 67 67.2
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 4.2e-14 80.9 65 69.2
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 4.2e-14 80.9 65 67.7
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 5.5e-14 80.5 67 65.7
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 7.9e-13 76.6 67 65.7
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 1.3e-12 75.9 68 67.6
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 1.3e-12 75.9 68 67.6
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 2.3e-12 75.1 62 66.1
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 3.0e-12 74.7 66 69.7
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.4e-11 70.1 82 53.7
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 1.6e-10 68.9 54 66.7
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 6.2e-10 67.0 77 53.2
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 1.1e-09 66.2 58 65.5
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.4e-09 65.9 65 56.9
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.8e-09 65.5 58 65.5
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.8e-09 65.5 58 65.5
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.4e-09 65.1 58 56.9
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.4e-09 65.1 58 56.9
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 4.0e-09 64.3 66 57.6
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 4.0e-09 64.3 65 60.0
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 9.0e-09 63.2 67 58.2
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.2e-08 62.8 42 76.2
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 5.8e-08 60.5 74 56.8
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 5.8e-08 60.5 58 60.3
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 1.7e-07 58.9 52 61.5
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 1.7e-07 58.9 66 51.5
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 2.2e-07 58.5 58 60.3
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 2.2e-07 58.5 58 60.3
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 2.9e-07 58.2 52 61.5
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 2.9e-07 58.2 52 61.5
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 3.8e-07 57.8 57 61.4
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 6.5e-07 57.0 53 62.3
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 6.5e-07 57.0 65 53.8
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 8.4e-07 56.6 66 57.6
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.4e-06 55.8 52 59.6


User provided reference genes

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