Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2704.1 1367 100.0
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2535.0 1383 92.1
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2526.1 1383 92.0
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2518.4 1383 91.5
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2509.9 1382 91.5
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2507.6 1382 90.4
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2501.9 1383 90.8
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2497.2 1367 91.1
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2495.7 1383 90.7
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2494.2 1383 90.6
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2492.2 1385 90.4
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2491.5 1384 90.9
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2491.5 1382 90.4
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2490.3 1385 90.0
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2489.1 1385 89.7
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2488.4 1383 89.7
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2487.2 1377 91.1
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1398 89.7
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2485.3 1384 90.3
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2483.8 1383 90.8
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1383 90.2
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2482.6 1388 89.9
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2480.3 1383 89.9
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2480.3 1398 89.1
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2479.9 1388 89.8
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2478.0 1386 89.6
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2476.4 1385 90.0
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1382 90.2
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2474.9 1383 89.9
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2474.5 1382 89.1
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2473.4 1382 89.1
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2469.9 1384 89.6
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2469.5 1383 89.7
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2468.7 1382 89.3
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2465.3 1384 89.2
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2465.3 1384 89.1
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2461.0 1383 89.4
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2459.5 1384 89.4
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2456.4 1382 88.3
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2455.2 1383 89.2
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2454.1 1382 88.4
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2454.1 1383 88.9
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2453.3 1382 88.9
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2451.0 1382 88.4
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2451.0 1382 88.7
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2451.0 1382 88.7
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2449.9 1383 88.6
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2447.9 1382 88.3
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2447.9 1382 88.3
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2447.2 1382 88.2
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2446.8 1382 88.4
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2446.0 1382 88.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2444.8 1382 88.4
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2444.5 1382 88.6
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2444.1 1382 88.4
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2443.7 1385 88.0
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2437.1 1384 88.0
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2436.0 1384 87.7
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2434.4 1384 88.6
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2433.3 1383 88.3
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2432.9 1409 86.6
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2427.9 1384 87.9
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2418.3 1384 87.5
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2417.1 1384 86.8
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2417.1 1384 87.4
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1386 86.4
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2413.3 1393 86.2
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2412.1 1383 86.7
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2410.9 1383 86.6
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2409.8 1374 87.9
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2404.8 1385 86.8
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2396.3 1378 87.1
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2392.5 1328 89.7
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2388.2 1446 82.8
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2386.7 1385 85.6
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2384.0 1384 85.5
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2382.8 1379 86.9
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2381.7 1384 85.5
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2381.3 1375 86.6
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2380.5 1384 86.3
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2373.2 1384 86.1
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2372.0 1384 85.8
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2370.9 1384 86.0
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2370.5 1384 86.0
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2369.0 1384 85.8
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2361.3 1355 86.8
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2355.9 1384 85.4
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2355.9 1384 85.4
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2348.9 1384 85.2
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2348.9 1384 85.2
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2347.4 1384 85.1
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2325.8 1385 84.5
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2322.7 1374 85.2
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2306.9 1384 84.2
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2300.4 1383 83.9
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2290.8 1354 84.3
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2288.5 1408 82.7
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2253.4 1258 90.4
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2253.0 1258 89.6
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2231.1 1331 82.6
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2189.8 1261 87.3
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2166.0 1347 82.0
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2145.2 1333 79.4
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2134.8 1341 77.8
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2126.3 1340 77.8
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2113.2 1372 76.0
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2113.2 1372 76.0
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2109.7 1369 75.6
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1964.1 1114 87.8
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1939.9 1102 87.6
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1934.5 1373 74.5
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1894.0 1400 73.1
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1833.5 1332 67.6
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1808.1 1350 66.3
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1681.8 913 91.2
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1681.0 1367 65.8
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1605.5 898 89.1
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1482.6 808 91.0
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1482.6 809 91.2
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1134.0 690 83.5
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1096.3 675 81.6
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 5.3e-297 1025.0 669 78.6
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 2.4e-289 999.6 571 85.6
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.9e-254 883.6 1199 43.4
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.2e-250 870.2 588 76.5
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.0e-231 808.1 454 88.5
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.2e-230 802.7 454 87.9
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 6.1e-229 798.9 455 87.3
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 2.1e-213 747.3 456 82.9
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 3.2e-193 680.2 398 84.4
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 5.3e-172 609.8 1378 32.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.1e-153 548.9 1485 29.3
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 7.8e-107 393.3 1263 28.1
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 3.0e-90 338.2 175 95.4
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.3e-66 259.6 147 86.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 3.2e-60 238.4 123 93.5
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 6.2e-48 197.6 107 92.5
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.2e-40 172.6 174 56.9
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 3.1e-31 142.1 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 5.0e-29 134.8 99 70.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.8e-26 126.3 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 8.0e-11 74.3 42 85.7


User provided reference genes

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